Accelerating BWA-MEM Read Mapping on GPUs-Reference-Cited by-同舟云学术

Accelerating BWA-MEM Read Mapping on GPUs

Published:2023-06-21 Issue: Volume: Page:
ISSN:
Container-title:Proceedings of the 37th International Conference on Supercomputing
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Author:

Pham Minh¹^ORCID,Tu Yicheng²^ORCID,Lv Xiaoyi³^ORCID

Affiliation:

1. Computer Science and Engineering, University of South Florida, Tampa, Florida, United States of America

2. Computer Science and Engineering, University of South Florida, Tampa, Florida, USA

3. College of Software, Xinjiang University, Urumqi, Xinjiang, China

Funder

National Institute of Health

Publisher

ACM

Reference33 articles.

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2. Thrust

3. A Novel High-Throughput Acceleration Engine for Read Alignment

4. Striped Smith-Waterman speeds database searches six times over other SIMD implementations

5. Paolo Ferragina and Giovanni Manzini . 2000 . Opportunistic data structures with applications . In Proceedings 41st annual symposium on foundations of computer science. IEEE, 390--398 . Paolo Ferragina and Giovanni Manzini. 2000. Opportunistic data structures with applications. In Proceedings 41st annual symposium on foundations of computer science. IEEE, 390--398.

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