These aren’t the loci you’e looking for: Principles of effective SNP filtering for molecular ecologists-Reference-Cited by-同舟云学术

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These aren’t the loci you’e looking for: Principles of effective SNP filtering for molecular ecologists

Published:2018-07-27 Issue:16 Volume:27 Page:3193-3206
ISSN:0962-1083
Container-title:Molecular Ecology
language:en
Short-container-title:Mol Ecol

Author:

O'Leary Shannon J.¹^ORCID,Puritz Jonathan B.²^ORCID,Willis Stuart C.¹³^ORCID,Hollenbeck Christopher M.⁴,Portnoy David S.¹

Affiliation:

1. Department of Life Sciences; Texas A&M University - Corpus Christi; Texas

2. Biological Sciences; University of Rhode Island; Kingston Rhode Island

3. Department of Ichthyology; California Academy of Sciences; San Francisco California

4. Scottish Oceans Institute; University of St Andrews; St Andrews Fife UK

Funder

U.S. Fish and Wildlife Service

Texas A&M Corpus Christi, College of Science and Engineering

National Oceanic and Atmospheric Administration

Publisher

Wiley

Subject

Genetics,Ecology, Evolution, Behavior and Systematics

Link

http://onlinelibrary.wiley.com/wol1/doi/10.1111/mec.14792/fullpdf

Reference48 articles.

1. Trade-offs and utility of alternative RADseq methods: Reply to Puritz et al.;Andrews;Molecular Ecology,2014

2. RADseq underestimates diversity and introduces genealogical biases due to nonrandom haplotype sampling;Arnold;Molecular Ecology,2013

3. Rapid SNP discovery and genetic mapping using sequenced RAD markers;Baird;PLoS ONE,2008

4. How to track and assess genotyping errors in population genetics studies;Bonin;Molecular Ecology,2004

5. Stacks: Building and genotyping loci de novo from short-read sequences;Catchen;G3: Genes|Genomes|Genetics,2011

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