<scp>BaRTv2</scp>: a highly resolved barley reference transcriptome for accurate transcript‐specific<scp>RNA</scp>‐seq quantification-Reference-Cited by-同舟云学术

BaRTv2: a highly resolved barley reference transcriptome for accurate transcript‐specificRNA‐seq quantification

Published:2022-07-19 Issue:4 Volume:111 Page:1183-1202
ISSN:0960-7412
Container-title:The Plant Journal
language:en
Short-container-title:The Plant Journal

Author:

Coulter Max¹,Entizne Juan Carlos¹,Guo Wenbin²,Bayer Micha²,Wonneberger Ronja³,Milne Linda²,Schreiber Miriam¹^ORCID,Haaning Allison⁴,Muehlbauer Gary J.⁴,McCallum Nicola⁵,Fuller John⁵,Simpson Craig⁵,Stein Nils³⁶^ORCID,Brown John W. S.¹⁵,Waugh Robbie¹⁵⁷^ORCID,Zhang Runxuan²^ORCID

Affiliation:

1. Division of Plant Sciences University of Dundee, James Hutton Institute InvergowrieDundeeDD2 5DA ScotlandUK

2. Information and Computational Sciences James Hutton Institute InvergowrieDundeeDD2 5DA ScotlandUK

3. Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Corrensstrasse 3D‐06466Stadt SeelandGermany

4. Department of Agronomy and Plant Genetics University of Minnesota 1991 Upper Buford Circle, 542 Borlaug Hall St Paul Minnesota 55108 USA

5. Cell and Molecular Sciences James Hutton Institute InvergowrieDundeeDD2 5DA ScotlandUK

6. Center for Integrated Breeding Research (CiBreed) Georg‐August‐University Göttingen Germany

7. School of Agriculture and Wine & Waite Research Institute University of Adelaide Waite Campus Glen Osmond South Australia 5064 Australia

Funder

National Science Foundation

University of Dundee

Biotechnology and Biological Sciences Research Council

Publisher

Wiley

Subject

Cell Biology,Plant Science,Genetics

Link

https://onlinelibrary.wiley.com/doi/pdf/10.1111/tpj.15871

Reference77 articles.

1. A survey of the sorghum transcriptome using single-molecule long reads

2. Leveraging transcript quantification for fast computation of alternative splicing profiles

3. Improving PacBio Long Read Accuracy by Short Read Alignment

4. Barakate A. Orr J. Schreiber M. et al. (2020)Time‐resolved transcriptome of barley anthers and meiocytes reveals robust and largely stable gene expression changes at meiosis entry.bioRxiv 2020.04.20.051425.

5. Alternative splicing as a regulator of development and tissue identity

Cited by 20 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. LsRTDv1, a reference transcript dataset for accurate transcript‐specific expression analysis in lettuce;The Plant Journal;2024-08-15

2. The cap-binding complex modulates ABA-responsive transcript splicing during germination in barley (Hordeum vulgare);Scientific Reports;2024-08-07

3. Unveiling unique alternative splicing responses to low temperature in Zoysia japonica through ZjRTD1.0, a high‐quality reference transcript dataset;Physiologia Plantarum;2024-03

4. Silencing of a raspberry homologue ofVRN1is associated with disruption of dormancy induction and misregulation of subsets of dormancy-associated genes;2024-02-15

5. Multi-omics responses of barley seedlings to low and high linear energy transfer irradiation;Environmental and Experimental Botany;2024-02