vcfr : a package to manipulate and visualize variant call format data in R-Reference-Cited by-同舟云学术

vcfr : a package to manipulate and visualize variant call format data in R

Published:2016-07-12 Issue:1 Volume:17 Page:44-53
ISSN:1755-098X
Container-title:Molecular Ecology Resources
language:en
Short-container-title:Mol Ecol Resour

Author:

Knaus Brian J.¹,Grünwald Niklaus J.¹²

Affiliation:

1. Horticultural Crops Research Unit USDA‐ARS Corvallis OR 97330 USA

2. Department of Botany and Plant Pathology Oregon State University Corvallis OR 97331 USA

Funder

U.S. Department of Agriculture

National Institute of Food and Agriculture

Publisher

Wiley

Subject

Genetics,Ecology, Evolution, Behavior and Systematics,Biotechnology

Link

https://onlinelibrary.wiley.com/doi/pdf/10.1111/1755-0998.12549

Reference34 articles.

1. From FastQ Data to High‐Confidence Variant Calls: The Genome Analysis Toolkit Best Practices Pipeline

2. Broad Institute of Harvard and MIT(2015)Phytophthora infestans sequencing project. Available from:http://www.broadinstitute.org(accessed 2015‐10‐2).

3. Rapid and Accurate Haplotype Phasing and Missing-Data Inference for Whole-Genome Association Studies By Use of Localized Haplotype Clustering

4. Genotyping‐in‐Thousands by sequencing (GT‐seq): A cost effective SNP genotyping method based on custom amplicon sequencing

5. Genome Analyses of an Aggressive and Invasive Lineage of the Irish Potato Famine Pathogen

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