ModEst: Accurate estimation of genome size from next generation sequencing data-Reference-Cited by-同舟云学术

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ModEst: Accurate estimation of genome size from next generation sequencing data

Published:2021-12-27 Issue: Volume: Page:
ISSN:1755-098X
Container-title:Molecular Ecology Resources
language:en
Short-container-title:Molecular Ecology Resources

Author:

Pfenninger Markus¹²³^ORCID,Schönnenbeck Philipp³,Schell Tilman²^ORCID

Affiliation:

1. Senckenberg Biodiversity and Climate Research Centre Frankfurt am Main Germany

2. LOEWE Centre for Translational Biodiversity GenomicsSenckenberg Biodiversity and Climate Research Centre Frankfurt am Main Germany

3. Institute for Organismic and Molecular Evolution Johannes Gutenberg University Mainz Germany

Publisher

Wiley

Subject

Genetics,Ecology, Evolution, Behavior and Systematics,Biotechnology

Link

https://onlinelibrary.wiley.com/doi/pdf/10.1111/1755-0998.13570

Reference56 articles.

1. Genome size variation in a hybridizing diploid species complex in Anacyclus (Asteraceae: Anthemideae);Agudo A. B.;International Journal of Plant Sciences,2019

2. Regional sequence expansion or collapse in heterozygous genome assemblies;Asalone K. C.;PLoS Computational Biology,2020

3. SPAdes: A new genome assembly algorithm and its applications to single‐cell sequencing;Bankevich A.;Journal of Computational Biology,2012

4. Genome Size Evolution in Plants

5. Small, but surprisingly repetitive genomes: transposon expansion and not polyploidy has driven a doubling in genome size in a metazoan species complex;Blommaert J.;BMC Genomics,2019

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2. Chromosome-level genome assembly of the sacoglossan sea slugElysia timida(Risso, 1818);2024-06-04

3. Genomic resources of aquatic Lepidoptera, Elophila obliteralis and Hyposmocoma kahamanoa, reveal similarities with Trichoptera in amino acid composition of major silk genes;G3: Genes, Genomes, Genetics;2024-05-09

4. LocoGSE, a sequence-based genome size estimator for plants;Frontiers in Plant Science;2024-03-14

5. nQuack: An R package for predicting ploidal level from sequence data using site-based heterozygosity;2024-02-12

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