Comparative BAC-based physical mapping ofOryza sativassp.indicavar. 93-11 and evaluation of the two rice reference sequence assemblies-Reference-Cited by-同舟云学术

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Comparative BAC-based physical mapping ofOryza sativassp.indicavar. 93-11 and evaluation of the two rice reference sequence assemblies

Published:2014-02-03 Issue:5 Volume:77 Page:795-805
ISSN:0960-7412
Container-title:The Plant Journal
language:en
Short-container-title:Plant J

Author:

Pan Yonglong¹,Deng Ying¹,Lin Haiyan¹,Kudrna David A.²,Wing Rod A.²,Li Lijia³,Zhang Qifa¹,Luo Meizhong¹

Affiliation:

1. National Key Laboratory of Crop Genetic Improvement; Huazhong Agricultural University; Wuhan 430070 China

2. Arizona Genomics Institute; University of Arizona; Tucson AZ 85721 USA

3. State Key Laboratory of Hybrid Rice; College of Life Sciences; Wuhan University; Wuhan 430072 China

Publisher

Wiley

Subject

Cell Biology,Plant Science,Genetics

Link

http://onlinelibrary.wiley.com/wol1/doi/10.1111/tpj.12412/fullpdf

Reference41 articles.

1. Limitations of next-generation genome sequence assembly;Alkan;Nat. Methods,2011

2. Random sheared fosmid library as a new genomic tool to accelerate complete finishing of rice (Oryza sativa spp. Nipponbare) genome sequence: sequencing of gap-specific fosmid clones uncovers new euchromatic portions of the genome;Ammiraju;Theor. Appl. Genet.,2005

3. Assemblies: the good, the bad, the ugly;Birney;Nat. Methods,2011

4. An integrated physical and genetic map of the rice genome;Chen;Plant Cell,2002

5. Lineage-specific biology revealed by a finished genome assembly of the mouse;Church;PLoS Biol.,2009

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1. A pan-TE map highlights transposable elements underlying domestication and agronomic traits in Asian rice;National Science Review;2024-05-03

2. SNPs, InDels, and Microsatellites within and Near to Rice NBS-LRR Resistance Gene Candidates;Agronomy;2021-11-13

3. Genomic resources of broomcorn millet: demonstration and application of a high-throughput BAC mapping pipeline;BMC Genomic Data;2021-11-01

4. High-throughput long paired-end sequencing of a Fosmid library by PacBio;Plant Methods;2019-11-26

5. Effective BAC clone anchoring with genotyping-by-sequencing and Diversity Arrays Technology in a large genome cereal rye;Scientific Reports;2018-05-30

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