Combining metagenomics with metaproteomics and stable isotope probing reveals metabolic pathways used by a naturally occurring marine methylotroph-Reference-Cited by-同舟云学术

Combining metagenomics with metaproteomics and stable isotope probing reveals metabolic pathways used by a naturally occurring marine methylotroph

Published:2015-07-21 Issue:10 Volume:17 Page:4007-4018
ISSN:1462-2912
Container-title:Environmental Microbiology
language:en
Short-container-title:Environ Microbiol

Author:

Grob Carolina¹,Taubert Martin¹,Howat Alexandra M.¹,Burns Oliver J.²,Dixon Joanna L.³,Richnow Hans H.⁴,Jehmlich Nico⁵,von Bergen Martin⁵⁶⁷,Chen Yin⁸,Murrell J. Colin¹

Affiliation:

1. School of Environmental Sciences; University of East Anglia; Norwich Research Park Norwich NR4 7TJ UK

2. School of Biological Sciences; University of East Anglia; Norwich Research Park Norwich NR4 7TJ UK

3. Plymouth Marine Laboratory; Prospect Place, West Hoe; Plymouth Devon PL1 3DH UK

4. Department of Isotope Biogeochemistry; Helmholtz-Centre for Environmental Research - UFZ; Leipzig Germany

5. Department of Proteomics; Helmholtz-Centre for Environmental Research-UFZ; Leipzig Germany

6. Department of Metabolomics; Helmholtz-Centre for Environmental Research - UFZ; Leipzig Germany

7. Department of Chemistry and Bioscience; University of Aalborg; Fredrik Bajers Vej 7H Aalborg East 9220 Denmark

8. School of Life Sciences; University of Warwick; Coventry CV4 7AL UK

Funder

European Regional Development Funds

Helmholtz Association

Gordon and Betty Moore Foundation Marine Microbiology Initiative

Earth and Life Systems Alliance, Norwich Research Park, Norwich, UK

Publisher

Wiley

Subject

Ecology, Evolution, Behavior and Systematics,Microbiology

Link

http://onlinelibrary.wiley.com/wol1/doi/10.1111/1462-2920.12935/fullpdf

Reference67 articles.

1. The methanol oxidation genes mxaFJGIR(S)ACKLD in Methylobacterium extorquens;Amaratunga;FEMS Microbiol Lett,1997

2. The structure and function of methanol dehydrogenase and related quinoproteins containing pyrroloquinoline quinone;Anthony;Biochem J,1994

3. The RAST Server: rapid annotations using subsystems technology;Aziz;BMC Genomics,2008

4. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing;Bankevich;J Comput Biol,2012

Cited by 49 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Detection of gut microflora and enzymes using metagenomics and metaproteomics in silkworm, Bombyx mori;2023-04-19

2. DNA-, RNA-, and Protein-Based Stable-Isotope Probing for High-Throughput Biomarker Analysis of Active Microorganisms;Methods in Molecular Biology;2022-10-29

3. Towards a Global Perspective of the Marine Microbiome;The Microbiomes of Humans, Animals, Plants, and the Environment;2022

4. Bioinformatics Toward Improving Bioremediation;Biotechnological Innovations for Environmental Bioremediation;2022

5. Revealing the community and metabolic potential of active methanotrophs by targeted metagenomics in the Zoige wetland of the Tibetan Plateau;Environmental Microbiology;2021-08-19