FTIR spectroscopic discrimination of Saccharomyces cerevisiae and Saccharomyces bayanus strains

Author:

Adt Isabelle1234,Kohler Achim1234,Gognies Sabine1234,Budin Julien1234,Sandt Christophe1234,Belarbi Abdelkader1234,Manfait Michel1234,Sockalingum Ganesh D.1234

Affiliation:

1. MéDIAN, Université de Reims Champagne–Ardenne, MEDyC CNRS UMR 6237, UFR Pharmacie, IFR53, 51 rue Cognacq-jay, 51096 REIMS CEDEX, France; Université de Lyon, Université Lyon 1, Laboratoire de recherche en génie industriel alimentaire, équipe d’accueil 3733, IUT de Lyon, Département Génie Biologique, Site Alimentec, Rue Henri de Boissieu, 01000 Bourg en Bresse, France.

2. Center for Biospectroscopy and Data Modelling, Matforsk, Norwegian Food Research Institute, 1430 Ås, Norway; CIGENE, Centre for Integrative Genetics, Department of Mathematical Sciences and Technology, University of Life Sciences, 1430 Ås, Norway.

3. Laboratoire de microbiologie générale et moléculaire, UFR Sciences, URVVC, UPRES EA 2069, B.P. 1039, 51687, Reims CEDEX 2, France.

4. MéDIAN, Université de Reims Champagne–Ardenne, MEDyC CNRS UMR 6237, UFR Pharmacie, IFR53, 51 rue Cognacq-jay, 51096 REIMS CEDEX, France.

Abstract

In this study, we tested the potential of Fourier-transform infrared absorption spectroscopy to screen, on the one hand, Saccharomyces cerevisiae and non-S. cerevisiae strains and, on the other hand, to discriminate between S. cerevisiae and Saccharomyces bayanus strains. Principal components analysis (PCA), used to compare 20 S. cerevisiae and 21 non-Saccharomyces strains, showed only 2 misclassifications. The PCA model was then used to classify spectra from 14 Samos strains. All 14 Samos strains clustered together with the S. cerevisiae group. This result was confirmed by a routinely used electrophoretic pattern obtained by pulsed-field gel electrophoresis. The method was then tested to compare S. cerevisiae and S. bayanus strains. Our results indicate that identification at the strain level is possible. This first result shows that yeast classification and S. bayanus identification can be feasible in a single measurement.

Publisher

Canadian Science Publishing

Subject

Genetics,Molecular Biology,Applied Microbiology and Biotechnology,General Medicine,Immunology,Microbiology

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