VirusDetect: An automated pipeline for efficient virus discovery using deep sequencing of small RNAs-Reference-Cited by-同舟云学术

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VirusDetect: An automated pipeline for efficient virus discovery using deep sequencing of small RNAs

Published:2017-01 Issue: Volume:500 Page:130-138
ISSN:0042-6822
Container-title:Virology
language:en
Short-container-title:Virology

Author:

Zheng Yi,Gao Shan,Padmanabhan Chellappan,Li Rugang,Galvez Marco,Gutierrez Dina,Fuentes Segundo,Ling Kai-Shu,Kreuze Jan,Fei Zhangjun

Funder

National Science Foundation

USDA SCRI

Publisher

Elsevier BV

Subject

Virology

Reference40 articles.

1. Sequence-independent characterization of viruses based on the pattern of viral small RNAs produced by the host;Aguiar;Nucleic Acids Res.,2015

2. Basic local alignment search tool;Altschul;J. Mol. Biol.,1990

3. SearchSmallRNA: a graphical interface tool for the assemblage of viral genomes using small RNA libraries data;de Andrade;Virol. J.,2014

4. Visitor, an informatic pipeline for analysis of viral siRNA sequencing datasets;Antoniewski;Methods Mol. Biol.,2011

5. Trimmomatic: a flexible trimmer for Illumina sequence data;Bolger;Bioinformatics,2014

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