Molecular Dynamics simulations of the Strings and Binders Switch model of chromatin-Reference-Cited by-同舟云学术

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Molecular Dynamics simulations of the Strings and Binders Switch model of chromatin

Published:2018-06 Issue: Volume:142 Page:81-88
ISSN:1046-2023
Container-title:Methods
language:en
Short-container-title:Methods

Author:

Annunziatella Carlo,Chiariello Andrea M.,Esposito Andrea,Bianco Simona,Fiorillo Luca,Nicodemi Mario

Funder

NIH

CINECA ISCRA

Einstein BIH

Publisher

Elsevier BV

Subject

General Biochemistry, Genetics and Molecular Biology,Molecular Biology

Reference53 articles.

1. Comprehensive mapping of long-range interactions reveals folding principles of the human genome;Lieberman-Aiden;Science,2009

2. Complex multi-enhancer contacts captured by genome architecture mapping;Beagrie;Nature,2017

3. Beyond the sequence: cellular organization of genome function;Misteli;Cell,2007

4. Dynamic genome architecture in the nuclear space: regulation of gene expression in three dimensions;Lanctôt;Nat. Rev. Genet.,2007

5. Genome architecture: domain organization of interphase chromosomes;Bickmore;Cell,2013

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1. Using Free Energy-Based Modeling to Predict Chromatin Loops in the Human Genome;Reference Module in Life Sciences;2024

2. Uncovering the lung cancer mechanisms through the chromosome structural ensemble characteristics;2023-08-15

3. Theory of chromatin organization maintained by active loop extrusion;Proceedings of the National Academy of Sciences;2023-05-30

4. Structural elements promote architectural stripe formation and facilitate ultra-long-range gene regulation at a human disease locus;Molecular Cell;2023-05

5. Brownian dynamics simulations of mesoscale chromatin fibers;Biophysical Journal;2022-09

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