Shape string: A new feature for prediction of DNA-binding residues-Reference-Cited by-同舟云学术

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Shape string: A new feature for prediction of DNA-binding residues

Published:2013-02 Issue:2 Volume:95 Page:354-358
ISSN:0300-9084
Container-title:Biochimie
language:en
Short-container-title:Biochimie

Author:

Wang Duo-Duo,Li Tong-Hua,Sun Jiang-Ming,Li Da-Peng,Xiong Wen-Wei,Wang Wen-Yan,Tang Sheng-Nan

Funder

National Natural Science Foundation of China

Publisher

Elsevier BV

Subject

General Medicine,Biochemistry

Reference41 articles.

1. An overview of the structures of protein-DNA complexes;Luscombe;Genome Biol.,2000

2. Insights into protein-DNA interactions through structure network analysis;Sathyapriya;PLoS Comput. Biol.,2008

3. A gel retardation assay for the interaction of proteins and carbohydrates by fluorophore-assisted carbohydrate electrophoresis;Hu;Anal. Biochem.,1994

4. Defining the sequence specificity of the Saccharomyces cerevisiae DNA binding protein REB1p by selecting binding sites from random-sequence oligonucleotides;Liaw;Yeast,1994

5. Methylation and uracil interference assays for analysis of protein-DNA interactions;Baldwin;Curr. Protoc. Mol. Biol. Chapter,2001

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1. DeepDISE: DNA Binding Site Prediction Using a Deep Learning Method;International Journal of Molecular Sciences;2021-05-24

2. C1188D mutation abolishes specific recognition between MLL1‐CXXC domain and CpG site by inducing conformational switch of flexible N‐terminal;Proteins: Structure, Function, and Bioinformatics;2020-07-03

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4. Identification of DNA–protein Binding Sites through Multi-Scale Local Average Blocks on Sequence Information;Molecules;2017-11-28

5. A Large-Scale Assessment of Nucleic Acids Binding Site Prediction Programs;PLOS Computational Biology;2015-12-17

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