Bioinformatics tools for lncRNA research-Reference-Cited by-同舟云学术

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Bioinformatics tools for lncRNA research

Published:2016-01 Issue:1 Volume:1859 Page:23-30
ISSN:1874-9399
Container-title:Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms
language:en
Short-container-title:Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms

Author:

Iwakiri Junichi,Hamada Michiaki,Asai Kiyoshi

Funder

MEXT KAKENHI

Young Scientists

Scientific Research

Scientific Research on Innovative Areas

Publisher

Elsevier BV

Subject

Genetics,Molecular Biology,Biochemistry,Structural Biology,Biophysics

Reference115 articles.

1. TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions;Kim;Genome Biol.,2013

2. Adaptive seeds tame genomic sequence comparison;Kiebasa;Genome Res.,2011

3. STAR: ultrafast universal RNA-seq aligner;Dobin;Bioinformatics,2013

4. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation;Trapnell;Nat. Biotechnol.,2010

5. Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs;Guttman;Nat. Biotechnol.,2010

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2. Current concepts of the crosstalk between lncRNA and E2F1: shedding light on the cancer therapy;Frontiers in Pharmacology;2024-07-25

3. Biological roles of SLC16A1-AS1 lncRNA and its clinical impacts in tumors;Cancer Cell International;2024-03-30

4. Role of Bioinformatics in Non-coding RNA Analysis;Advances in Bioinformatics;2024

5. The expression landscape and pangenome of long non-coding RNA in the fungal wheat pathogen Zymoseptoria tritici;Microbial Genomics;2023-11-22

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