Nonparametric single-cell multiomic characterization of trio relationships between transcription factors, target genes, and cis-regulatory regions-Reference-Cited by-同舟云学术

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Nonparametric single-cell multiomic characterization of trio relationships between transcription factors, target genes, and cis-regulatory regions

Published:2022-09 Issue:9 Volume:13 Page:737-751.e4
ISSN:2405-4712
Container-title:Cell Systems
language:en
Short-container-title:Cell Systems

Author:

Jiang Yuchao,Harigaya Yuriko,Zhang Zhaojun,Zhang Hongpan,Zang Chongzhi,Zhang Nancy R.

Funder

NHGRI

NIGMS

National Institutes of Health

Publisher

Elsevier BV

Subject

Cell Biology,Histology,Pathology and Forensic Medicine

Reference53 articles.

1. Mechanisms regulating GABAergic neuron development;Achim;Cell. Mol. Life Sci.,2014

2. Pioneer factors govern super-enhancer dynamics in stem cell plasticity and lineage choice;Adam;Nature,2015

3. An atlas of active enhancers across human cell types and tissues;Andersson;Nature,2014

4. Dimensionality reduction for visualizing single-cell data using UMAP;Becht;Nat. Biotechnol.,2019

5. Integrating motif, DNA accessibility and gene expression data to build regulatory maps in an organism;Blatti;Nucleic Acids Res.,2015

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2. A single-cell multimodal view on gene regulatory network inference from transcriptomics and chromatin accessibility data;Briefings in Bioinformatics;2024-07-25

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4. REUNION: transcription factor binding prediction and regulatory association inference from single-cell multi-omics data;Bioinformatics;2024-06-28

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