1. A survey of DNA motif finding algorithms;Das;BMC Bioinformatics,2007
2. REPuter: the manifold applications of repeat analysis on a genomic scale;Kurtz;Nucleic Acids Res,2001
3. Tompa M. An exact method for finding short motifs in sequences, with application to the ribosome binding site problem, in: Proceedings of the seventh international conference on intelligent systems on molecular biology; 1999. p. 262–71.
4. Discovering regulatory elements in non-coding sequences by analysis of spaced dyads;van Helden;Nucleic Acids Res,2000
5. Sinha S, Tompa M. A statistical method for finding transcription factor binding site. In: Proc. of the 8th international conference on intelligent systems on molecular biology; 2000. p. 344–54.