Simulation of coupled folding and binding of an intrinsically disordered protein in explicit solvent with metadynamics-Reference-Cited by-同舟云学术

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Simulation of coupled folding and binding of an intrinsically disordered protein in explicit solvent with metadynamics

Published:2016-07 Issue: Volume:68 Page:114-127
ISSN:1093-3263
Container-title:Journal of Molecular Graphics and Modelling
language:en
Short-container-title:Journal of Molecular Graphics and Modelling

Author:

Han Mengzhi,Xu Ji,Ren Ying,Li Jinghai

Funder

National Natural Science Foundation of China

Ministry of Science and Technology of China

Publisher

Elsevier BV

Subject

Materials Chemistry,Computer Graphics and Computer-Aided Design,Physical and Theoretical Chemistry,Spectroscopy

Reference71 articles.

1. Structural disorder in eukaryotes;Pancsa;PLoS One,2012

2. Malleable machines take shape in eukaryotic transcriptional regulation;Fuxreiter;Nat. Chem. Biol.,2008

3. Intrinsic disorder in cell-signaling and cancer-associated proteins;Iakoucheva;J. Mol. Biol.,2002

4. Intrinsically disordered proteins in human diseases: introducing the D2 concept;Uversky;Annu. Rev. Biophys.,2008

5. Molecular dynamics simulations of intrinsically disordered proteins in human diseases;Wang;Curr. Comput.-Aided Drug Des.,2009

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1. Atomic Scale Structure of Self‐Assembled Lipidated Peptide Nanomaterials;Advanced Materials;2024-03-22

2. Folding-upon-binding pathways of an intrinsically disordered protein from a deep Markov state model;Proceedings of the National Academy of Sciences;2024-01-31

3. Rational drug design targeting intrinsically disordered proteins;WIREs Computational Molecular Science;2023-08-26

4. Folding-upon-binding pathways of an intrinsically disordered protein from a deep Markov state model;2023-07-25

5. Self-assembling peptide biomaterials: Insights from spontaneous and enhanced sampling molecular dynamics simulations;Chemical Physics Reviews;2023-04-21

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