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Exploiting Docker containers over Grid computing for a comprehensive study of chromatin conformation in different cell types

  • Published:2019-12 Issue: Volume:134 Page:116-127
  • ISSN:0743-7315
  • Container-title:Journal of Parallel and Distributed Computing
  • language:en
  • Short-container-title:Journal of Parallel and Distributed Computing

Author:

Merelli IvanORCID,Fornari FedericoORCID,Tordini Fabio,D’Agostino Daniele,Aldinucci MarcoORCID,Cesini Daniele

Funder

Italian Flagship Project InterOmics, Italy

European Commission’s 7th Framework Programme

European Commission’s Horizon 2020 Framework Programme

Publisher

Elsevier BV

Subject

Artificial Intelligence,Computer Networks and Communications,Hardware and Architecture,Theoretical Computer Science,Software

Reference75 articles.

1. The galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update;Afgan;Nucleic Acids Res.,2018

2. Using cloud computing infrastructure with cloudbiolinux, cloudman, and galaxy;Afgan;Current Protoc. Bioinform.,2012

3. Behavioural skeletons for component autonomic management on grids;Aldinucci,2008

4. Fastflow: high-level and efficient streaming on multi-core;Aldinucci,2017

5. The case for docker in multicloud enabled bioinformatics applications;Ali,2016

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1. Hound: A Parallel Image Distribution System for Cluster Based on Docker;Journal of Systems Engineering and Electronics;2023-08

2. Using Singularity for Geant4-Based Simulations on HPC Infrastructures;2022 IEEE Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC);2022-11-05

3. A Model Proposal for Analyzing Open-Source Information in End-User Computers;International Journal of Intelligence and CounterIntelligence;2021-06-07

4. Advantages of using graph databases to explore chromatin conformation capture experiments;BMC Bioinformatics;2021-04

5. DL-HAR: Deep Learning-Based Human Activity Recognition Framework for Edge Computing;Computers, Materials & Continua;2020
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