A measure of DNA sequence similarity by Fourier Transform with applications on hierarchical clustering-Reference-Cited by-同舟云学术

A measure of DNA sequence similarity by Fourier Transform with applications on hierarchical clustering

Published:2014-10 Issue: Volume:359 Page:18-28
ISSN:0022-5193
Container-title:Journal of Theoretical Biology
language:en
Short-container-title:Journal of Theoretical Biology

Author:

Yin Changchuan,Chen Ying,Yau Stephen S.-T.

Funder

Natural Science Foundation of Sichuan Province

Tsinghua University

National Natural Science Foundation of China

Publisher

Elsevier BV

Subject

Applied Mathematics,General Agricultural and Biological Sciences,General Immunology and Microbiology,General Biochemistry, Genetics and Molecular Biology,Modelling and Simulation,General Medicine,Statistics and Probability

Reference47 articles.

1. Efficient similarity search in sequence databases;Agrawal,1993

2. Genomic signal processing;Anastassiou;IEEE Signal Process. Mag.,2001

3. A measure of the similarity of sets of sequences not requiring sequence alignment;Blaisdell;Proc. Natl. Acad. Sci.,1986

4. Effectiveness of measures requiring and not requiring prior sequence alignment for estimating the dissimilarity of natural sequences;Blaisdell;J. Mol. Evol.,1989

5. Alignment-free phylogeny of whole genomes using underlying subwords;Comin;Algorithms Mol. Biol.,2012

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