Design and implementation of a CUDA-compatible GPU-based core for gapped BLAST algorithm

Author:

Ling Cheng,Benkrid Khaled

Publisher

Elsevier BV

Subject

General Engineering

Reference20 articles.

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2. Searching protein sequence libraries: comparison of the sensitivity and selectively of the Smith-Waterman and FASTA algorithms;Pearson;Genomics,1990

3. A Highly Parameterised and Efficient FPGA-Based Skeleton for Pairwise Biological Sequence Alignment;Benkrid;IEEE Transactions on Very Large Scale Integration (VLSI Systems),2009

4. M. Charalambous, P Transcoso, A. Stamatakis, Intial experiences porting a bioinformatics application to a graphics processor. In Processings of 10th Panhellenic Conference on Informatics, 2005.

5. Identification of common molecular subsequences;Smith;J. Molecular Biology,1981

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