Effects of different assembly strategies on gene annotation in activated sludge-Reference-Cited by-同舟云学术

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Effects of different assembly strategies on gene annotation in activated sludge

Published:2024-07 Issue: Volume:252 Page:119116
ISSN:0013-9351
Container-title:Environmental Research
language:en
Short-container-title:Environmental Research

Author:

Liu Meng,Xu Nuohan,Chen Bingfeng,Zhang Zhenyan,Chen Xinyu,Zhu Yuke,Hong Wenjie,Wang Tingzhang,Zhang Qi,Ye Yangqing,Lu Tao,Qian Haifeng

Funder

National Natural Science Foundation of China

China Postdoctoral Science Foundation

Shanxi Provincial Postdoctoral Science Foundation

Publisher

Elsevier BV

Reference49 articles.

1. CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database;Alcock;Nucleic Acids Res,2023

2. NanoARG: a web service for detecting and contextualizing antimicrobial resistance genes from nanopore-derived metagenomes;Arango-Argoty;Microbiome,2019

3. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing;Bankevich;J. Comput. Biol.,2012

4. Assembling large genomes with single-molecule sequencing and locality-sensitive hashing;Berlin;Nat. Biotechnol.,2015

5. Hybrid metagenomic assembly enables high-resolution analysis of resistance determinants and mobile elements in human microbiomes;Bertrand;Nat. Biotechnol.,2019

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