ShapeMetrics: A userfriendly pipeline for 3D cell segmentation and spatial tissue analysis-Reference-Cited by-同舟云学术

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ShapeMetrics: A userfriendly pipeline for 3D cell segmentation and spatial tissue analysis

Published:2020-06 Issue:1 Volume:462 Page:7-19
ISSN:0012-1606
Container-title:Developmental Biology
language:en
Short-container-title:Developmental Biology

Author:

Takko Heli,Pajanoja Ceren,Kurtzeborn Kristen,Hsin Jenny,Kuure Satu,Kerosuo Laura

Funder

Lasten Syöpäsäätiö Väreen

Sigrid Juséliuksen Säätiö

Academy of Finland

Suomen Kulttuurirahasto

Publisher

Elsevier BV

Subject

Cell Biology,Developmental Biology,Molecular Biology

Reference19 articles.

1. CHD7 cooperates with PBAF to control multipotent neural crest formation;Bajpai;Nature,2010

2. A high-throughput imaging and nuclear segmentation analysis protocol for cleared 3D culture models;Boutin;Sci. Rep.,2018

3. Data-analysis strategies for image-based cell profiling;Caicedo;Nat. Methods,2017

4. High-throughput image analysis of tumor spheroids: a user-friendly software application to measure the size of spheroids automatically and accurately;Chen;JoVE,2014

5. Hedgehog signaling regulates cell motility and optic fissure and stalk formation during vertebrate eye morphogenesis;Gordon;Development,2018

Cited by 12 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Biomechanical regulation of cell shapes promotes branching morphogenesis of the ureteric bud epithelium;2024-03-31

2. Fusome topology and inheritance during insect gametogenesis;PLOS Computational Biology;2023-02-23

3. Novel image analysis tool for rapid screening of cell morphology in preclinical animal models of disease;Heliyon;2023-02

4. ShapeMetrics: A 3D Cell Segmentation Pipeline for Single-Cell Spatial Morphometric Analysis;Methods in Molecular Biology;2023

5. Usability of deep learning pipelines for 3D nuclei identification with Stardist and Cellpose;Cells & Development;2022-12

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