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Improving hash-q exact string matching algorithm with perfect hashing for DNA sequences

  • Published:2021-04 Issue: Volume:131 Page:104292
  • ISSN:0010-4825
  • Container-title:Computers in Biology and Medicine
  • language:en
  • Short-container-title:Computers in Biology and Medicine

Author:

Karcioglu Abdullah Ammar,Bulut Hasan

Publisher

Elsevier BV

Subject

Health Informatics,Computer Science Applications

Reference29 articles.

1. Disease diagnosis using pattern matching algorithm from DNA sequencing: a sequential and GPGPU based approach;Mane,2016

2. A new approach in pattern matching: codon Detection in DNA and RNA using hash function (CDDRHF);Upama,2015

3. Trends in genome compression, Current Bioinformatics, vol;Wandelt;9, no,2014

4. Data compression for sequencing data;Deorowicz;Algorithm Mol. Biol.,2013

5. DNA lossless compression algorithms, American Journal of Bioinformatics Research, vol;Bakr;3, no,2013

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1. Predicting DNA sequence splice site based on graph convolutional network and DNA graph construction;Journal of King Saud University - Computer and Information Sciences;2024-06

2. Meta-Sezgisel Tabanlı Clustal-SA Algoritmasını Kullanarak DNA Sekanslarında Çoklu Dizi Hizalama;Iğdır Üniversitesi Fen Bilimleri Enstitüsü Dergisi;2024-06-01

3. Multi-Pattern GPU Accelerated Collision-Less Rabin-Karp for NIDS;International Journal of Distributed Systems and Technologies;2024-03-27

4. An Improved Hashing Approach for Biological Sequence to Solve Exact Pattern Matching Problems;Applied Computational Intelligence and Soft Computing;2023-11-20

5. Largest Shift String Matching Algorithm: Blend of Berry Ravindran, Zhu-Takaoka and Back & Forth Matching Algorithm;2022 25th International Conference on Computer and Information Technology (ICCIT);2022-12-17
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