SnpFilt: A pipeline for reference-free assembly-based identification of SNPs in bacterial genomes-Reference-Cited by-同舟云学术

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SnpFilt: A pipeline for reference-free assembly-based identification of SNPs in bacterial genomes

Published:2016-12 Issue: Volume:65 Page:178-184
ISSN:1476-9271
Container-title:Computational Biology and Chemistry
language:en
Short-container-title:Computational Biology and Chemistry

Author:

Chan Carmen H.S.,Octavia Sophie,Sintchenko Vitali,Lan Ruiting

Funder

National Health and Medical Research Council of Australia

Publisher

Elsevier BV

Subject

Computational Mathematics,Organic Chemistry,Biochemistry,Structural Biology

Reference39 articles.

1. Limitations of next-generation genome sequence assembly;Alkan;Nat. Meth.,2011

2. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing;Bankevich;J. Comput. Biol.,2012

3. Genome project standards in a new era of sequencing;Chain;Science,2009

4. ALE: a generic assembly likelihood evaluation framework for assessing the accuracy of genome and metagenome assemblies;Clark;Bioinformatics,2013

5. Rapid whole-genome sequencing for surveillance of Salmonella enterica serovar enteritidis;den Bakker;Emerg. Infect. Dis.,2014

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