Evaluating the accuracy and sensitivity of detecting minority HIV-1 populations by Illumina next-generation sequencing

Author:

Kireev D.E.,Lopatukhin A.E.,Murzakova A.V.,Pimkina E.V.,Speranskaya A.S.,Neverov A.D.,Fedonin G.G.ORCID,Fantin Yu. S.,Shipulin G.A.

Publisher

Elsevier BV

Subject

Virology

Reference22 articles.

1. Characterizing the emergence and persistence of drug resistant mutations in HIV-1 subtype C infections using 454 ultra deep pyrosequencing;Bansode;BMC Infect. Dis.,2013

2. Trimmomatic: a flexible trimmer for illumina sequence data;Bolger;Bioinformatics,2014

3. Generation of HIV-1 Gag VLPs by transient transfection of HEK 293 suspension cell cultures using an optimized animal-derived component free medium;Cervera;J. Biotechnol.,2013

4. Added value of deep sequencing relative to population sequencing in heavily pretreated HIV-1-infected subjects;Codoner;PLoS One,2011

5. Low-cost ultra-wide genotyping using Roche/454 pyrosequencing for surveillance of HIV drug resistance;Dudley;PLoS One,2012

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