Novel application of normalized pointwise mutual information (NPMI) to mine biomedical literature for gene sets associated with disease: Use case in breast carcinogenesis-Reference-Cited by-同舟云学术

Novel application of normalized pointwise mutual information (NPMI) to mine biomedical literature for gene sets associated with disease: Use case in breast carcinogenesis

Published:2018-08 Issue: Volume:7 Page:46-57
ISSN:2468-1113
Container-title:Computational Toxicology
language:en
Short-container-title:Computational Toxicology

Author:

Watford Sean M.,Grashow Rachel G.,De La Rosa Vanessa Y.,Rudel Ruthann A.,Friedman Katie Paul,Martin Matthew T.

Publisher

Elsevier BV

Subject

Health, Toxicology and Mutagenesis,Computer Science Applications,Toxicology

Reference76 articles.

1. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles;Subramanian;Proc. Natl. Acad. Sci. U.S.A.,2005

2. Self-contained gene-set analysis of expression data: an evaluation of existing and novel methods;Fridley;PLoS One,2010

3. Linking gene expression to phenotypes via pathway information;Papatheodorou;J. Biomed. Semant.,2015

4. 27-Hydroxycholesterol links hypercholesterolemia and breast cancer pathophysiology;Nelson;Science,2013

5. Adverse health outcomes in women exposed in utero to diethylstilbestrol;Hoover;N. Engl. J. Med.,2011

Cited by 11 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Searching for LINCS to Stress: Using Text Mining to Automate Reference Chemical Curation;Chemical Research in Toxicology;2024-05-13

2. Embedding-based terminology expansion via secondary use of large clinical real-world datasets;Journal of Biomedical Informatics;2023-11

3. An expert-driven literature review of “negative” chemicals for developmental neurotoxicity (DNT) in vitro assay evaluation;Neurotoxicology and Teratology;2022-09

4. Environmental mixtures and breast cancer: identifying co-exposure patterns between understudied vs breast cancer-associated chemicals using chemical inventory informatics;Journal of Exposure Science & Environmental Epidemiology;2022-06-16

5. Expert-Augmented Computational Drug Repurposing Identified Baricitinib as a Treatment for COVID-19;Frontiers in Pharmacology;2021-07-28