NeuralBeds: Neural embeddings for efficient DNA data compression and optimized similarity search

Author:

Sarumi Oluwafemi A.,Hahn Maximilian,Heider DominikORCID

Funder

Bundesministerium für Bildung und Forschung

BMBF Berlin

Publisher

Elsevier BV

Reference41 articles.

1. An efficient similarity search based on indexing in large dna databases;Jeong;Comput Biol Chem,2010

2. Towards the accurate alignment of over a million protein sequences: current state of the art;Santus;Curr Opin Struct Biol,2023

3. Bakta: rapid and standardized annotation of bacterial genomes via alignment-free sequence identification;Schwengers;Microb Genom,2021

4. Mosga: modular open-source genome annotator;Martin;Bioinformatics,2021

5. Shiva-a web application for drug resistance and tropism testing in hiv;Riemenschneider;BMC Bioinform,2016

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