On the methodological weakness of ‘the effective number of codons’: a reply to Marashi and Najafabadi
Author:
Publisher
Elsevier BV
Subject
Cell Biology,Molecular Biology,Biochemistry,Biophysics
Reference4 articles.
1. The ‘effective number of codons’ used in a gene;Wright;Gene,1990
2. The ‘effective number of codons’ revisited;Fuglsang;Biochem. Biophys. Res. Commun.,2004
3. How reliable re-adjustment is: correspondence regarding A. Fuglsang, “The ‘effective number of codons’ revisited”;Marashi;Biochem. Biophys. Res. Commun.,2004
4. The number of alleles that can be maintained in a finite population;Kimura;Genetics,1964
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2. Codon degeneracy and amino acid abundance influence the measures of codon usage bias: improved Nc (N̂c) and ENCprime (N̂′c) measures;Genes to Cells;2017-02-10
3. A more accurate relationship between ‘effective number of codons’ and GC3s under assumptions of no selection;Computational Biology and Chemistry;2013-02
4. Relative Codon Adaptation Index, a Sensitive Measure of Codon Usage Bias;Evolutionary Bioinformatics;2010-01
5. Impact of bias discrepancy and amino acid usage on estimates of the effective number of codons used in a gene, and a test for selection on codon usage;Gene;2008-02
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