A minimal Gō-model for rebuilding whole genome structures from haploid single-cell Hi-C data-Reference-Cited by-同舟云学术

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A minimal Gō-model for rebuilding whole genome structures from haploid single-cell Hi-C data

Published:2020-02 Issue: Volume:173 Page:109178
ISSN:0927-0256
Container-title:Computational Materials Science
language:en
Short-container-title:Computational Materials Science

Author:

Wettermann S.,Brems M.,Siebert J.T.,Vu G.T.,Stevens T.J.,Virnau P.

Funder

Deutsche Forschungsgemeinschaft

Publisher

Elsevier BV

Subject

Computational Mathematics,General Physics and Astronomy,Mechanics of Materials,General Materials Science,General Chemistry,General Computer Science

Reference48 articles.

1. Chromosome territories, nuclear architecture and gene regulation in mammalian cells;Cremer;Nat. Rev. Genet.,2001

2. Chromatin architecture reorganization during stem cell differentiation;Dixon;Nature,2015

3. Organization of the mitotic chromosome;Naumova;Science,2013

4. Role of chromosome territories in the functional compartmentalization of the cell nucleus;Cremer;Cold Spring Harb. Symp. Quant. Biol.,1993

5. Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations;Branco;PLoS Biol.,2006

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2. Reconstructing diploid 3D chromatin structures from single cell Hi-C data with a polymer-based approach;Frontiers in Bioinformatics;2023-12-11

3. Single-chain and condensed-state behavior of hnRNPA1 from molecular simulations;The Journal of Chemical Physics;2022-10-21

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