1. Victorian Infectious Disease Service, Melbourne Health, Melbourne, Victoria 3000, Australia
2. Doherty Institute for Infection and Immunity, Victoria 3000, Australia
3. Mycobacterium Reference Laboratory, Victorian Infectious Diseases Reference Laboratory, Melbourne Health, Melbourne, Victoria 3000, Australia
4. Department of Microbiology and Immunology, University of Melbourne, Melbourne, Victoria 3000, Australia
5. Victorian Life Sciences Computation Initiative, University of Melbourne, Parkville, Victoria 3010, Australia
6. Doherty Applied Microbial Genomics, Doherty Institute for Infection and Immunity, Melbourne, Victoria 3000, Australia
7. Victorian Tuberculosis Program, Melbourne, Victoria 3000, Australia