NASP: an accurate, rapid method for the identification of SNPs in WGS datasets that supports flexible input and output formats-Reference-Cited by-同舟云学术

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NASP: an accurate, rapid method for the identification of SNPs in WGS datasets that supports flexible input and output formats

Published:2016-08-25 Issue:8 Volume:2 Page:
ISSN:2057-5858
Container-title:Microbial Genomics
language:en
Short-container-title:

Author:

Sahl Jason W.¹²,Lemmer Darrin¹,Travis Jason¹,Schupp James M.¹,Gillece John D.¹,Aziz Maliha³,Driebe Elizabeth M.¹,Drees Kevin P.⁴,Hicks Nathan D.⁵,Williamson Charles Hall Davis²,Hepp Crystal M.²,Smith David Earl¹,Roe Chandler¹,Engelthaler David M.¹,Wagner David M.²,Keim Paul²

Affiliation:

1. 1Translational Genomics Research Institute, Phoenix, Arizona, USA

2. 2Northern Arizona University, S San Francisco St, Flagstaff, AZ 86011, USA

3. 3The George Washington University, 2121 I St NW, Washington, DC 20052, USA

4. 4University of New Hampshire, 105 Main St, Durham, NH 03824, USA

5. 5Harvard University, Cambridge, MA 02138, USA

Publisher

Microbiology Society

Subject

General Medicine

Reference49 articles.

1. ExaBayes: Massively Parallel Bayesian Tree Inference for the Whole-Genome Era

2. Mugsy: fast multiple alignment of closely related whole genomes

3. Automated Reconstruction of Whole-Genome Phylogenies from Short-Sequence Reads

4. The Complete Genome Sequence of Escherichia coli K-12

5. Trimmomatic: a flexible trimmer for Illumina sequence data

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