GROND: a quality-checked and publicly available database of full-length 16S-ITS-23S rRNA operon sequences-Reference-Cited by-同舟云学术

GROND: a quality-checked and publicly available database of full-length 16S-ITS-23S rRNA operon sequences

Published:2024-06-07 Issue:6 Volume:10 Page:
ISSN:2057-5858
Container-title:Microbial Genomics
language:en
Short-container-title:

Author:

Walsh Calum J.¹^ORCID,Srinivas Meghana²³^ORCID,Stinear Timothy P.¹^ORCID,van Sinderen Douwe²^ORCID,Cotter Paul D.⁴³²^ORCID,Kenny John G.²³⁴^ORCID

Affiliation:

1. Doherty Applied Microbial Genomics, Department of Microbiology & Immunology, The University of Melbourne at the Peter Doherty Institute for Infection & Immunity, 792 Elizabeth Street, Melbourne VIC 3000, Australia

2. APC Microbiome Ireland & School of Microbiology, University College Cork, Cork, Ireland

3. Teagasc Food Research Centre, Moorepark, Cork, Ireland

4. VistaMilk SFI Research Centre, Teagasc Moorepark, Cork, Ireland

Abstract

Sequence comparison of 16S rRNA PCR amplicons is an established approach to taxonomically identify bacterial isolates and profile complex microbial communities. One potential application of recent advances in long-read sequencing technologies is to sequence entire rRNA operons and capture significantly more phylogenetic information compared to sequencing of the 16S rRNA (or regions thereof) alone, with the potential to increase the proportion of amplicons that can be reliably classified to lower taxonomic ranks. Here we describe GROND (Genome-derived Ribosomal Operon Database), a publicly available database of quality-checked 16S-ITS-23S rRNA operons, accompanied by multiple taxonomic classifications. GROND will aid researchers in analysis of their data and act as a standardised database to allow comparison of results between studies.

Funder

National Health and Medical Research Council

Science Foundation Ireand

Teagasc

Publisher

Microbiology Society

Link

https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.001255?crawler=true&mimetype=application/pdf

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