Human Genetics and Genomics for Drug Target Identification and Prioritization: Open Targets’ Perspective

Author:

McDonagh Ellen M.123,Trynka Gosia13,McCarthy Mark4,Holzinger Emily Rose5,Khader Shameer6,Nakic Nikolina7,Hu Xinli8,Cornu Helena23,Dunham Ian123,Hulcoop David123

Affiliation:

1. 3Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK

2. 2European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, UK

3. 1Open Targets, Wellcome Genome Campus, Hinxton, UK; email: emcdonagh@ebi.ac.uk

4. 4Genentech, South San Francisco, California, USA

5. 5Bristol Myers Squibb, Cambridge, Massachusetts, USA

6. 6Precision Medicine & Computational Biology, Sanofi, Cambridge, Massachusetts, USA

7. 7Genomic Sciences, GSK, Stevenage, UK

8. 8Inflammation and Immunology, Pfizer Research and Development, Inc., Cambridge, Massachusetts, USA

Abstract

Open Targets, a consortium among academic and industry partners, focuses on using human genetics and genomics to provide insights to key questions that build therapeutic hypotheses. Large-scale experiments generate foundational data, and open-source informatic platforms systematically integrate evidence for target–disease relationships and provide dynamic tooling for target prioritization. A locus-to-gene machine learning model uses evidence from genome-wide association studies (GWAS Catalog, UK BioBank, and FinnGen), functional genomic studies, epigenetic studies, and variant effect prediction to predict potential drug targets for complex diseases. These predictions are combined with genetic evidence from gene burden analyses, rare disease genetics, somatic mutations, perturbation assays, pathway analyses, scientific literature, differential expression, and mouse models to systematically build target–disease associations ( https://platform.opentargets.org ). Scored target attributes such as clinical precedence, tractability, and safety guide target prioritization. Here we provide our perspective on the value and impact of human genetics and genomics for generating therapeutic hypotheses.

Publisher

Annual Reviews

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