Open Targets Platform: supporting systematic drug–target identification and prioritisation

Author:

Ochoa David12,Hercules Andrew12,Carmona Miguel12,Suveges Daniel12,Gonzalez-Uriarte Asier12,Malangone Cinzia12,Miranda Alfredo12,Fumis Luca12,Carvalho-Silva Denise12,Spitzer Michaela12,Baker Jarrod12,Ferrer Javier12,Raies Arwa12,Razuvayevskaya Olesya12,Faulconbridge Adam12,Petsalaki Eirini12,Mutowo Prudence23,Machlitt-Northen Sandra23,Peat Gareth12,McAuley Elaine12,Ong Chuang Kee12,Mountjoy Edward24,Ghoussaini Maya24,Pierleoni Andrea12,Papa Eliseo25,Pignatelli Miguel12,Koscielny Gautier23,Karim Mohd24,Schwartzentruber Jeremy24,Hulcoop David G23,Dunham Ian124,McDonagh Ellen M12

Affiliation:

1. European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK

2. Open Targets, Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK

3. GlaxoSmithKline plc, GSK Medicines Research Centre, Gunnels Wood Road, Stevenage SG1 2NY, UK

4. Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SA, UK

5. Systems Biology, Biogen, Cambridge, MA 02142, USA

Abstract

Abstract The Open Targets Platform (https://www.targetvalidation.org/) provides users with a queryable knowledgebase and user interface to aid systematic target identification and prioritisation for drug discovery based upon underlying evidence. It is publicly available and the underlying code is open source. Since our last update two years ago, we have had 10 releases to maintain and continuously improve evidence for target–disease relationships from 20 different data sources. In addition, we have integrated new evidence from key datasets, including prioritised targets identified from genome-wide CRISPR knockout screens in 300 cancer models (Project Score), and GWAS/UK BioBank statistical genetic analysis evidence from the Open Targets Genetics Portal. We have evolved our evidence scoring framework to improve target identification. To aid the prioritisation of targets and inform on the potential impact of modulating a given target, we have added evaluation of post-marketing adverse drug reactions and new curated information on target tractability and safety. We have also developed the user interface and backend technologies to improve performance and usability. In this article, we describe the latest enhancements to the Platform, to address the fundamental challenge that developing effective and safe drugs is difficult and expensive.

Funder

Open Targets

Publisher

Oxford University Press (OUP)

Subject

Genetics

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