Assessing therapy response in patient-derived xenografts

Author:

Ortmann Janosch12ORCID,Rampášek Ladislav345ORCID,Tai Elijah3,Mer Arvind Singh67ORCID,Shi Ruoshi6,Stewart Erin L.6,Mascaux Celine689,Fares Aline6,Pham Nhu-An6,Beri Gangesh6,Eeles Christopher6,Tkachuk Denis6,Ho Chantal6,Sakashita Shingo6,Weiss Jessica6ORCID,Jiang Xiaoqian10,Liu Geoffrey6,Cescon David W.6ORCID,O’Brien Catherine A.67111213,Guo Sheng10ORCID,Tsao Ming-Sound6ORCID,Haibe-Kains Benjamin346714ORCID,Goldenberg Anna34515ORCID

Affiliation:

1. Département AOTI, Université du Québec à Montréal, Montréal, QC H2X3X2, Canada.

2. Group for Research in Decision Analysis (GERAD), Montreal, QC H3T1J4, Canada.

3. Department of Computer Science, University of Toronto, Toronto, ON M5S2E4, Canada.

4. Vector Institute for Artificial Intelligence, Toronto, ON M5G1M1, Canada.

5. Hospital for Sick Children, Toronto, ON M5G1X8, Canada.

6. Princess Margaret Cancer Centre, University Health Network, Toronto, ON M5G1L7, Canada.

7. Department of Medical Biophysics, University of Toronto, Toronto, ON M5G1L7, Canada.

8. Pulmonology Department, Hôpitaux Universitaires de Strasbourg, 67200 Strasbourg, France.

9. Laboratory of Molecular Mechanisms of the Stress Response and Pathologies, INSERM U1113, 3 Avenue Molière, 67200 Strasbourg, France.

10. Crown Bioscience Taicang Inc., No.6 Beijing West Road, Taicang, Jiangsu 215400, P. R. China.

11. Department of Laboratory Medicine and Pathobiology, University of Toronto, Toronto, ON M5S1A8, Canada.

12. Department of Physiology, University of Toronto, Toronto, ON M5G1L7, Canada.

13. Department of Surgery, Toronto General Hospital, Toronto, ON M5G2C4, Canada.

14. Ontario Institute for Cancer Research, Toronto, ON M5G1L7, Canada.

15. CIFAR, Toronto, ON M5G1M1, Canada.

Abstract

We propose a measure for robust quantification of in vivo drug response that accounts for variation across both treatment and control replicates.

Publisher

American Association for the Advancement of Science (AAAS)

Subject

General Medicine

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