Integrated single-cell RNA-seq analysis reveals mitochondrial calcium signaling as a modulator of endothelial-to-mesenchymal transition

Author:

Lebas Mathilde1ORCID,Chinigò Giorgia2ORCID,Courmont Evan1ORCID,Bettaieb Louay1ORCID,Machmouchi Amani1ORCID,Goveia Jermaine3,Beatovic Aleksandar3,Van Kerckhove Job3ORCID,Robil Cyril1ORCID,Angulo Fabiola Silva1,Vedelago Mauro1ORCID,Errerd Alina14ORCID,Treps Lucas5ORCID,Gao Vance1ORCID,Delgado De la Herrán Hilda C.6ORCID,Mayeuf-Louchart Alicia1ORCID,L’homme Laurent1ORCID,Chamlali Mohamed1ORCID,Dejos Camille7ORCID,Gouyer Valérie8ORCID,Garikipati Venkata Naga Srikanth9,Tomar Dhanendra10ORCID,Yin Hao11ORCID,Fukui Hajime12ORCID,Vinckier Stefan13ORCID,Stolte Anneke14ORCID,Conradi Lena-Christin14ORCID,Infanti Fabrice15,Lemonnier Loic7ORCID,Zeisberg Elisabeth1617,Luo Yonglun18ORCID,Lin Lin18ORCID,Desseyn Jean-Luc8ORCID,Pickering J.1119ORCID,Kishore Raj2021ORCID,Madesh Muniswamy22ORCID,Dombrowicz David1ORCID,Perocchi Fabiana62324,Staels Bart1ORCID,Pla Alessandra Fiorio27ORCID,Gkika Dimitra25ORCID,Cantelmo Anna Rita1ORCID

Affiliation:

1. Université de Lille, Inserm, CHU Lille, Institut Pasteur de Lille, U1011-EGID, F-59000 Lille, France.

2. Department of Life Sciences and Systems Biology, University of Torino, 10123 Torino, Italy.

3. Unicle Biomedical Data Science, Leuven, Belgium.

4. Molecular Biosciences/Cancer Biology Program, Heidelberg University and German Cancer Research Center (DKFZ), Heidelberg, Germany.

5. Nantes Université, INSERM UMR 1307, CNRS UMR 6075, Université d'Angers, CRCI2NA, F-44000 Nantes, France.

6. Institute for Diabetes and Obesity, Helmholtz Diabetes Center, Helmholtz Zentrum München, Munich, Germany.

7. INSERM, U1003 - PHYCEL - Physiologie Cellulaire, Université de Lille, F-59000 Lille, France.

8. Université de Lille, Inserm, CHU Lille, U1286 Infinite, F-59000 Lille, France.

9. Aging + Cardiovascular Discovery Center, Department of Cardiovascular Sciences, Lewis Katz School of Medicine, Temple University, Philadelphia, PA 19140, USA.

10. Department of Internal Medicine, Wake Forest University School of Medicine, Winston-Salem, NC 27157 USA.

11. Robarts Research Institute, Western University, London, Canada.

12. National Cerebral and Cardiovascular Center Research Institute, Suita, Osaka 564-8565, Japan.

13. Laboratory of Angiogenesis and Vascular Metabolism, Center for Cancer Biology (CCB), VIB and Department of Oncology, Leuven Cancer Institute (LKI), KU Leuven, Leuven, Belgium.

14. Department of General, Visceral and Pediatric Surgery, University Medical Center Göttingen, Robert-Koch-Straβe 40, 37075 Göttingen, Germany.

15. 4 Science Consulting, F-59000 Lille, France.

16. Department of Cardiology and Pneumology, University Medical Center Göttingen, Robert-Koch-Str. 40, 37075 Göttingen, Germany.

17. DZHK German Center for Cardiovascular Research, Partner Site Lower Saxony, Göttingen, Germany.

18. Department of Biomedicine, Aarhus University, Aarhus, Denmark.

19. Department of Medicine, Biochemistry, and Medical Biophysics, Western University, London, Canada.

20. Center for Translational Medicine, Lewis Katz School of Medicine, Temple University, Philadelphia, PA 19140, USA.

21. Department of Cardiovascular Sciences, Lewis Katz School of Medicine, Temple University, Philadelphia, PA 19140 USA.

22. Department of Medicine, Center for Mitochondrial Medicine, Division of Cardiology, University of Texas Health San Antonio, San Antonio, TX 78229 USA.

23. Institute of Neuronal Cell Biology, Technical University of Munich, Munich, Germany.

24. Munich Cluster for Systems Neurology, Munich, Germany.

25. Université de Lille, CNRS, Inserm, CHU Lille, UMR9020-U1277-CANTHER-Cancer Heterogeneity Plasticity and Resistance to Therapies, F-59000 Lille, France.

Abstract

Endothelial cells (ECs) are highly plastic, capable of differentiating into various cell types. Endothelial-to-mesenchymal transition (EndMT) is crucial during embryonic development and contributes substantially to vascular dysfunction in many cardiovascular diseases (CVDs). While targeting EndMT holds therapeutic promise, understanding its mechanisms and modulating its pathways remain challenging. Using single-cell RNA sequencing on three in vitro EndMT models, we identified conserved gene signatures. We validated original regulators in vitro and in vivo during embryonic heart development and peripheral artery disease. EndMT induction led to global expression changes in all EC subtypes rather than in mesenchymal clusters. We identified mitochondrial calcium uptake as a key driver of EndMT; inhibiting mitochondrial calcium uniporter (MCU) prevented EndMT in vitro, and conditional Mcu deletion in ECs blocked mesenchymal activation in a hind limb ischemia model. Tissues from patients with critical limb ischemia with EndMT features exhibited significantly elevated endothelial MCU. These findings highlight MCU as a regulator of EndMT and a potential therapeutic target.

Publisher

American Association for the Advancement of Science (AAAS)

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