Ancient mitogenomes from Pre-Pottery Neolithic Central Anatolia and the effects of a Late Neolithic bottleneck in sheep ( <i>Ovis aries</i> )-Reference-Cited by-同舟云学术

Ancient mitogenomes from Pre-Pottery Neolithic Central Anatolia and the effects of a Late Neolithic bottleneck in sheep ( Ovis aries )

Published:2024-04-12 Issue:15 Volume:10 Page:
ISSN:2375-2548
Container-title:Science Advances
language:en
Short-container-title:Sci. Adv.

Author:

Sandoval-Castellanos Edson¹²^ORCID,Hare Andrew J.³^ORCID,Lin Audrey T.⁴⁵^ORCID,Dimopoulos Evangelos A.⁴⁶^ORCID,Daly Kevin G.³⁷^ORCID,Geiger Sheila²,Mullin Victoria E.³^ORCID,Wiechmann Ingrid²,Mattiangeli Valeria³^ORCID,Lühken Gesine⁸^ORCID,Zinovieva Natalia A.⁹^ORCID,Zidarov Petar¹⁰^ORCID,Çakırlar Canan¹¹^ORCID,Stoddart Simon¹²^ORCID,Orton David¹³^ORCID,Bulatović Jelena¹⁴^ORCID,Mashkour Marjan¹⁵,Sauer Eberhard W.¹⁶,Horwitz Liora Kolska¹⁷,Horejs Barbara¹⁸^ORCID,Atici Levent¹⁹^ORCID,Özkaya Vecihi²⁰^ORCID,Mullville Jacqui²¹^ORCID,Parker Pearson Michael²²^ORCID,Mainland Ingrid²³^ORCID,Card Nick²³^ORCID,Brown Lisa²⁴^ORCID,Sharples Niall²¹,Griffiths David²⁵,Allen David²⁶^ORCID,Arbuckle Benjamin²⁷^ORCID,Abell Jordan T.²⁸^ORCID,Duru Güneş²⁹,Mentzer Susan M.³⁰^ORCID,Munro Natalie D.³¹^ORCID,Uzdurum Melis³²^ORCID,Gülçur Sevil³³,Buitenhuis Hijlke³⁴,Gladyr Elena⁹^ORCID,Stiner Mary C.³⁵,Pöllath Nadja³⁶³⁷^ORCID,Özbaşaran Mihriban³³^ORCID,Krebs Stefan³⁸^ORCID,Burger Joachim³⁹^ORCID,Frantz Laurent⁴⁰⁴¹,Medugorac Ivica¹³⁷^ORCID,Bradley Daniel G.³^ORCID,Peters Joris²³⁶³⁷^ORCID

Affiliation:

1. Population Genomics Group, Department of Veterinary Sciences, LMU Munich, 82152 Martinsried, Germany.

2. Institute of Palaeoanatomy, Domestication Research and the History of Veterinary Medicine, LMU Munich, 80539 Munich, Germany.

3. Smurfit Institute of Genetics, Trinity College Dublin, Dublin D02 PN40, Ireland.

4. The Palaeogenomics and Bio-archaeology Research Network, Research Laboratory for Archaeology and History of Art, University of Oxford, Oxford, UK.

5. Department of Anthropology, National Museum of Natural History, Smithsonian Institution, Washington, DC, 20560 USA.

6. Department of Veterinary Medicine, University of Cambridge, Cambridge, UK.

7. School of Agriculture and Food Science, University College Dublin, Dublin, Ireland.

8. Institute of Animal Breeding and Genetics, Justus Liebig University of Gießen, Ludwigstr. 21, 35390 Gießen, Germany.

9. L.K. Ernst Federal Research Centre for Animal Husbandry, Dubrovitsy, Podolsk, Moscow Region, Russia.

10. Institute of Prehistory, Early History and Medieval Archaeology, Tübingen University, Tübingen, Germany.

11. Institute of Archaeology, University of Groningen, 9712 ER Groningen, Netherlands.

12. Magdalene College, University of Cambridge, Cambridge CB3 0AG, UK.

13. BioArCh, Department of Archaeology, University of York, York YO10 5NG, UK.

14. Department of Historical Studies, University of Gothenburg, BOX 200, 40530 Gothenburg, Sweden.

15. Unité Archéozoologie, Archéobotanique, Sociétés Pratiques et Environnements (AASPE), CNRS, Muséum National d’Histoire Naturelle, 75020 Paris, France.

16. School of History, Classics and Archaeology, University of Edinburgh, Old Medical School, Teviot Place, Edinburgh EH8 9AG, UK.

17. National Natural History Collections, Faculty of Life Sciences, The Hebrew University, Jerusalem, Israel.

18. OeAI, Austrian Academy of Sciences and HEAS, University of Vienna, Vienna, Austria.

19. Department of Anthropology, University of Nevada, Las Vegas, NV 89154, USA.

20. Department of Archaeology, Dicle University, Diyarbakir, Türkiye.

21. School of History, Archaeology and Religion, Cardiff University, Cardiff CF10 3EU, UK.

22. Institute of Archaeology, University College London, London, UK.

23. The University of the Highlands and Islands Orkney, Kirkwall, UK.

24. Wiltshire Museum, Devizes SN10 1NS, UK.

25. University of Oxford, OUDCE, Rewley House, Oxford OX1 2JA, UK.

26. Hampshire Cultural Trust, Chilcomb House, Winchester, SO23 8RB, UK.

27. Department of Anthropology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA.

28. Department of Geosciences, University of Arizona, Tucson, AZ 85721, USA.

29. Department of Archaeology, Mimar Sinan Fine Arts University, 34381 Şişli/İstanbul, Türkiye.

30. Senckenberg Centre for Human Evolution and Palaeoenvironment, Institute for Archaeological Sciences, Department of Geosciences, Tübingen University, 72074 Tübingen, Germany.

31. Department of Anthropology, University of Connecticut, Storrs, CT 06269, USA.

32. Department of Archaeology, Ondokuz Mayıs University, 55270 Atakum/Samsun, Türkiye.

33. Prehistory Department, Faculty of Letters, Istanbul University, 34134 Istanbul, Türkiye.

34. Archeosupport, 9712 LN Groningen, Netherlands.

35. School of Anthropology, University of Arizona, Tucson, AZ 85721, USA.

36. Bavarian Natural History Collections, State Collection of Palaeoanatomy Munich, 80333 Munich, Germany.

37. ArchaeoBioCenter, LMU Munich, 80539 Munich, Germany.

38. Laboratory for Functional Genome Analysis (LAFUGA), Gene Center, LMU Munich, Feodor-Lynen-Straße 25, 81377 Munich, Germany.

39. Institute of Organismic and Molecular Evolution (iomE), Johannes Gutenberg University Mainz, 55128 Mainz, Germany.

40. Palaeogenomics Group, Institute of Palaeoanatomy, Domestication Research and the History of Veterinary Medicine, LMU Munich, 80539 Munich, Germany.

41. School of Biological and Behavioural Sciences, Queen Mary University of London, London, UK.

Abstract

Occupied between ~10,300 and 9300 years ago, the Pre-Pottery Neolithic site of Aşıklı Höyük in Central Anatolia went through early phases of sheep domestication. Analysis of 629 mitochondrial genomes from this and numerous sites in Anatolia, southwest Asia, Europe, and Africa produced a phylogenetic tree with excessive coalescences (nodes) around the Neolithic, a potential signature of a domestication bottleneck. This is consistent with archeological evidence of sheep management at Aşıklı Höyük which transitioned from residential stabling to open pasturing over a millennium of site occupation. However, unexpectedly, we detected high genetic diversity throughout Aşıklı Höyük’s occupation rather than a bottleneck. Instead, we detected a tenfold demographic bottleneck later in the Neolithic, which caused the fixation of mitochondrial haplogroup B in southwestern Anatolia. The mitochondrial genetic makeup that emerged was carried from the core region of early Neolithic sheep management into Europe and dominates the matrilineal diversity of both its ancient and the billion-strong modern sheep populations.

Publisher

American Association for the Advancement of Science (AAAS)

Link

https://www.science.org/doi/pdf/10.1126/sciadv.adj0954

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