SARS-CoV-2 mutations in MHC-I-restricted epitopes evade CD8 + T cell responses

Author:

Agerer Benedikt1ORCID,Koblischke Maximilian2ORCID,Gudipati Venugopal3ORCID,Montaño-Gutierrez Luis Fernando4ORCID,Smyth Mark1ORCID,Popa Alexandra1ORCID,Genger Jakob-Wendelin1ORCID,Endler Lukas1ORCID,Florian David M.2,Mühlgrabner Vanessa3,Graninger Marianne2,Aberle Stephan W.2,Husa Anna-Maria4ORCID,Shaw Lisa Ellen5ORCID,Lercher Alexander1ORCID,Gattinger Pia6ORCID,Torralba-Gombau Ricard1ORCID,Trapin Doris7,Penz Thomas1,Barreca Daniele1ORCID,Fae Ingrid8ORCID,Wenda Sabine8ORCID,Traugott Marianna9ORCID,Walder Gernot10,Pickl Winfried F.711,Thiel Volker1213,Allerberger Franz14ORCID,Stockinger Hannes3ORCID,Puchhammer-Stöckl Elisabeth2,Weninger Wolfgang5,Fischer Gottfried7ORCID,Hoepler Wolfgang9ORCID,Pawelka Erich8ORCID,Zoufaly Alexander8,Valenta Rudolf36111516,Bock Christoph117ORCID,Paster Wolfgang4ORCID,Geyeregger René4ORCID,Farlik Matthias5ORCID,Halbritter Florian4ORCID,Huppa Johannes B.3ORCID,Aberle Judith H.2,Bergthaler Andreas1ORCID

Affiliation:

1. CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna, Austria.

2. Center for Virology, Medical University of Vienna, Vienna, Austria.

3. Institute for Hygiene and Applied Immunology, Center for Pathophysiology, Infectiology and Immunology, Medical University of Vienna, Vienna, Austria.

4. St. Anna Children´s Cancer Research Institute (CCRI), Vienna, Austria.

5. Department of Dermatology, Medical University of Vienna, Vienna, Austria.

6. Department of Pathophysiology and Allergy Research, Division of Immunopathology, Medical University of Vienna, Vienna, Austria.

7. Institute of Immunology, Center for Pathophysiology, Infectiology and Immunology, Medical University of Vienna, Vienna, Austria.

8. Department of Blood Group Serology and Transfusion Medicine, Medical University of Vienna, Vienna, Austria.

9. Department of Medicine 4, Clinic Favoriten, Vienna, Austria.

10. Division of Hygiene and Medical Microbiology, Medical University of Innsbruck, Innsbruck, Austria.

11. Karl Landsteiner University of Health Sciences, Krems, Austria.

12. Institute of Virology and Immunology, Bern and Mittelhäusern, Switzerland.

13. Department of Infectious Diseases and Pathobiology, Vetsuisse Faculty, University of Bern, Bern, Switzerland.

14. Austrian Agency for Health and Food Safety (AGES), Vienna, Austria.

15. Laboratory for Immunopathology, Department of Clinical Immunology and Allergy, First Moscow State Medical University Sechenov, Moscow, Russia.

16. NRC Institute of Immunology FMBA of Russia, Moscow, Russia.

17. Department of Laboratory Medicine, Medical University of Vienna, Vienna, Austria.

Abstract

SARS-CoV-2 mutations in MHC-I epitopes identified by deep viral sequencing evade CTL responses through decreased peptide-MHC-I binding.

Funder

H2020 European Research Council

European Research Council

Vienna Science and Technology Fund

Austrian Science Fund

Austrian Academy of Sciences

Scientific Fund of the Mayor of the federal capital Vienna

Medical-Scientific Fund of the Mayor of Vienna

Publisher

American Association for the Advancement of Science (AAAS)

Subject

General Medicine,Immunology

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