Dual domestications and origin of traits in grapevine evolution

Author:

Dong Yang12ORCID,Duan Shengchang12ORCID,Xia Qiuju3ORCID,Liang Zhenchang4ORCID,Dong Xiao12ORCID,Margaryan Kristine56ORCID,Musayev Mirza7ORCID,Goryslavets Svitlana8ORCID,Zdunić Goran9ORCID,Bert Pierre-François10ORCID,Lacombe Thierry11ORCID,Maul Erika12ORCID,Nick Peter13ORCID,Bitskinashvili Kakha14ORCID,Bisztray György Dénes15ORCID,Drori Elyashiv1617ORCID,De Lorenzis Gabriella18ORCID,Cunha Jorge1920ORCID,Popescu Carmen Florentina21ORCID,Arroyo-Garcia Rosa22ORCID,Arnold Claire23ORCID,Ergül Ali24ORCID,Zhu Yifan1ORCID,Ma Chao25ORCID,Wang Shufen12,Liu Siqi12,Tang Liu12,Wang Chunping12,Li Dawei12ORCID,Pan Yunbing12,Li Jingxian12,Yang Ling12,Li Xuzhen12ORCID,Xiang Guisheng12,Yang Zijiang12ORCID,Chen Baozheng12,Dai Zhanwu4ORCID,Wang Yi4ORCID,Arakelyan Arsen52627ORCID,Kuliyev Varis28,Spotar Gennady8ORCID,Girollet Nabil10,Delrot Serge10ORCID,Ollat Nathalie10,This Patrice11ORCID,Marchal Cécile29,Sarah Gautier11ORCID,Laucou Valérie11,Bacilieri Roberto11ORCID,Röckel Franco12ORCID,Guan Pingyin13ORCID,Jung Andreas30,Riemann Michael13ORCID,Ujmajuridze Levan14ORCID,Zakalashvili Tekle14ORCID,Maghradze David14,Höhn Maria15ORCID,Jahnke Gizella15ORCID,Kiss Erzsébet15ORCID,Deák Tamás15ORCID,Rahimi Oshrit16,Hübner Sariel31ORCID,Grassi Fabrizio3233ORCID,Mercati Francesco34ORCID,Sunseri Francesco35ORCID,Eiras-Dias José1920ORCID,Dumitru Anamaria Mirabela21ORCID,Carrasco David22ORCID,Rodriguez-Izquierdo Alberto22ORCID,Muñoz Gregorio36ORCID,Uysal Tamer37ORCID,Özer Cengiz37ORCID,Kazan Kemal38ORCID,Xu Meilong39,Wang Yunyue1ORCID,Zhu Shusheng1ORCID,Lu Jiang40ORCID,Zhao Maoxiang25,Wang Lei25,Jiu Songtao25,Zhang Ying41,Sun Lei41,Yang Huanming42ORCID,Weiss Ehud43ORCID,Wang Shiping25ORCID,Zhu Youyong1ORCID,Li Shaohua4ORCID,Sheng Jun12ORCID,Chen Wei12ORCID

Affiliation:

1. State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming 650201, China.

2. Yunnan Research Institute for Local Plateau Agriculture and Industry, Kunming 650201, China.

3. State Key Laboratory of Agricultural Genomics, BGI-Shenzhen, Shenzhen 518083, China.

4. Beijing Key Laboratory of Grape Science and Oenology and Key Laboratory of Plant Resources, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

5. Institute of Molecular Biology, NAS RA, 0014 Yerevan, Armenia.

6. Yerevan State University, 0014 Yerevan, Armenia.

7. Genetic Resources Institute, Azerbaijan National Academy of Sciences, AZ1106 Baku, Azerbaijan.

8. National Institute of Viticulture and Winemaking Magarach, Yalta 298600, Crimea.

9. Institute for Adriatic Crops and Karst Reclamation, 21000 Split, Croatia.

10. Bordeaux University, Bordeaux Sciences Agro, INRAE, UMR EGFV, ISVV, 33882 Villenave d’Ornon, France.

11. AGAP Institut, University of Montpellier, CIRAD, INRAE, Institut Agro Montpellier, 34398 Montpellier, France.

12. Julius Kühn Institute (JKI) – Federal Research Center for Cultivated Plants, Institute for Grapevine Breeding Geilweilerhof, 76833 Siebeldingen, Germany.

13. Botanical Institute, Karlsruhe Institute of Technology, 76131 Karlsruhe, Germany.

14. LEPL Scientific Research Center of Agriculture, 0159 Tbilisi, Georgia.

15. Hungarian University of Agriculture and Life Sciences (MATE), 1118 Budapest, Hungary.

16. Department of Chemical Engineering, Ariel University, 40700 Ariel, Israel.

17. Eastern Regional R&D Center, 40700 Ariel, Israel.

18. Department of Agricultural and Environmental Sciences, University of Milano, 20133 Milano, Italy.

19. Instituto Nacional de Investigação Agrária e Veterinária, I.P./INIAV-Dois Portos, 2565-191 Torres Vedras, Portugal.

20. Green-it Unit, Instituto de Tecnologia Química e Biológica, Universidade Nova de Lisboa, 2780-157 Oeiras, Portugal.

21. National Research and Development Institute for Biotechnology in Horticulture, Stefanesti, 117715 Arges, Romania.

22. Center for Plant Biotechnology and Genomics, UPM-INIA/CSIC, Pozuelo de Alarcon, 28223 Madrid, Spain.

23. University of Lausanne, 1015 Lausanne, Switzerland.

24. Biotechnology Institute, Ankara University, 06135 Ankara, Turkey.

25. Department of Plant Science, School of Agriculture and Biology, Shanghai JiaoTong University, Shanghai 200240, China.

26. Armenian Bioinformatics Institute, 0014 Yerevan, Armenia.

27. Biomedicine and Pharmacy, RAU, 0051 Yerevan, Armenia.

28. Institute of Bioresources, Nakhchivan Branch of the Azerbaijan National Academy of Sciences, AZ7000 Nakhchivan, Azerbaijan.

29. Vassal-Montpellier Grapevine Biological Resources Center, INRAE, 34340 Marseillan-Plage, France.

30. Historische Rebsorten-Sammlung, Rebschule (K39), 67599 Gundheim, Germany.

31. Galilee Research Institute (Migal), Tel-Hai Academic College, 12210 Upper Galilee, Israel.

32. Department of Biotechnology and Biosciences, University of Milano-Bicocca, 20126 Milano, Italy.

33. NBFC, National Biodiversity Future Center, 90133 Palermo, Italy.

34. Institute of Biosciences and Bioresources, National Research Council, 90129 Palermo, Italy.

35. Department AGRARIA, University Mediterranea of Reggio Calabria, Reggio 89122 Calabria, Italy.

36. IMIDRA, Alcalá de Henares, 28805 Madrid, Spain.

37. Viticulture Research Institute, Ministry of Agriculture and Forestry, 59200 Tekirdağ, Turkey.

38. Queensland Alliance for Agriculture and Food Innovation, University of Queensland, St. Lucia, Queensland 4072, Australia.

39. Institute of Horticulture, Ningxia Academy of Agricultural and Forestry Sciences, Yinchuan 750002, China.

40. Center for Viticulture and Oenology, School of Agriculture and Biology, Shanghai JiaoTong University, Shanghai 200240, China.

41. Zhengzhou Fruit Research Institutes, CAAS, Zhengzhou 450009, China.

42. BGI-Shenzhen, Shenzhen 518083, China.

43. The Martin (Szusz) Department of Land of Israel Studies and Archaeology, Bar-Ilan University, 5290002 Ramat-Gan, Israel.

Abstract

We elucidate grapevine evolution and domestication histories with 3525 cultivated and wild accessions worldwide. In the Pleistocene, harsh climate drove the separation of wild grape ecotypes caused by continuous habitat fragmentation. Then, domestication occurred concurrently about 11,000 years ago in Western Asia and the Caucasus to yield table and wine grapevines. The Western Asia domesticates dispersed into Europe with early farmers, introgressed with ancient wild western ecotypes, and subsequently diversified along human migration trails into muscat and unique western wine grape ancestries by the late Neolithic. Analyses of domestication traits also reveal new insights into selection for berry palatability, hermaphroditism, muscat flavor, and berry skin color. These data demonstrate the role of the grapevines in the early inception of agriculture across Eurasia.

Publisher

American Association for the Advancement of Science (AAAS)

Subject

Multidisciplinary

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