Comparative Metagenomics of Microbial Communities-Reference-Cited by-同舟云学术

Comparative Metagenomics of Microbial Communities

Published:2005-04-22 Issue:5721 Volume:308 Page:554-557
ISSN:0036-8075
Container-title:Science
language:en
Short-container-title:Science

Author:

Tringe Susannah Green¹²³⁴⁵,von Mering Christian¹²³⁴⁵,Kobayashi Arthur¹²³⁴⁵,Salamov Asaf A.¹²³⁴⁵,Chen Kevin¹²³⁴⁵,Chang Hwai W.¹²³⁴⁵,Podar Mircea¹²³⁴⁵,Short Jay M.¹²³⁴⁵,Mathur Eric J.¹²³⁴⁵,Detter John C.¹²³⁴⁵,Bork Peer¹²³⁴⁵,Hugenholtz Philip¹²³⁴⁵,Rubin Edward M.¹²³⁴⁵

Affiliation:

1. Department of Energy (DOE) Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA.

2. Lawrence Berkeley National Laboratory, Genomics Division, Berkeley, CA 94720, USA.

3. European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany.

4. University of California, Berkeley, Department of Electrical Engineering and Computer Science, Berkeley, CA 94720, USA.

5. Diversa Corporation, 4955 Directors Place, San Diego, CA 92121, USA.

Abstract

The species complexity of microbial communities and challenges in culturing representative isolates make it difficult to obtain assembled genomes. Here we characterize and compare the metabolic capabilities of terrestrial and marine microbial communities using largely unassembled sequence data obtained by shotgun sequencing DNA isolated from the various environments. Quantitative gene content analysis reveals habitat-specific fingerprints that reflect known characteristics of the sampled environments. The identification of environment-specific genes through a gene-centric comparative analysis presents new opportunities for interpreting and diagnosing environments.

Publisher

American Association for the Advancement of Science (AAAS)

Subject

Multidisciplinary

Reference24 articles.

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