Structural basis of ribosomal frameshifting during translation of the SARS-CoV-2 RNA genome

Author:

Bhatt Pramod R.123ORCID,Scaiola Alain1ORCID,Loughran Gary2ORCID,Leibundgut Marc1ORCID,Kratzel Annika456ORCID,Meurs Romane7ORCID,Dreos René7ORCID,O’Connor Kate M.2ORCID,McMillan Angus8ORCID,Bode Jeffrey W.8ORCID,Thiel Volker45,Gatfield David7ORCID,Atkins John F.239ORCID,Ban Nenad1ORCID

Affiliation:

1. Department of Biology, Institute of Molecular Biology and Biophysics, ETH Zurich, Zurich, Switzerland.

2. School of Biochemistry and Cell Biology, University College Cork, Cork T12 XF62, Ireland.

3. School of Microbiology, University College Cork, Cork T12 K8AF, Ireland.

4. Institute of Virology and Immunology, University of Bern, Bern, Switzerland.

5. Department of Infectious Diseases and Pathobiology, Vetsuisse Faculty, University of Bern, Bern, Switzerland.

6. Graduate School for Cellular and Biomedical Sciences, University of Bern, Bern, Switzerland.

7. Center for Integrative Genomics, Génopode, University of Lausanne, 1015 Lausanne, Switzerland.

8. Laboratorium für Organische Chemie, Department of Chemistry and Applied Biosciences, ETH Zurich, Zurich, Switzerland.

9. MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, UK.

Abstract

Shifting frames to make more proteins Severe acute respiratory syndrome coronavirus 2 critically depends on the ribosomal frameshifting that occurs between two large open reading frames in its genomic RNA for expression of viral replicase. Programmed frameshifting occurs during translation, when the ribosome encounters a stimulatory pseudoknot RNA fold. Using a combination of cryo–electron microscopy and biochemistry, Bhatt et al. revealed that the pseudoknot resists unfolding as it lodges at the entry of the ribosomal messenger RNA channel. This causes back slippage of the viral RNA, resulting in a minus-1 shift of the reading frame of translation. A partially folded nascent viral polyprotein forms specific interactions inside the ribosomal tunnel that can influence the efficiency of frameshifting. Science , abf3546, this issue p. 1306

Funder

Swiss National Science Foundation

Irish Research Council

The Federal Ministry of Education and Research, Germany

Publisher

American Association for the Advancement of Science (AAAS)

Subject

Multidisciplinary

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