The gills and skin microbiota of five pelagic fish species from the Atlantic Ocean

Abstract

Abstract The gills and skin microbiota and microbiome of wild fish remain far more under-investigated compared to that of farmed fish species, despite that these animal-microbe interactions hold the same ecophysiological roles in both cases. In this study, the gills and skin bacterial microbiota profiles and their presumptive bacterial metabolisms were investigated in five open-sea fishes: bullet tuna (Auxis sp.), common dolphinfish (Coryphaena hippurus), Atlantic little tunny (Euthynnus alletteratus), Atlantic bonito (Sarda sarda) and Atlantic white marlin (Tetrapturus albidus). Gills and skin tissues were collected from two to three individuals per species, from specimens caught by recreational trolling during summer of 2019 and their bacterial 16S rRNA gene diversity was analysed by high-throughput sequencing. The gills bacterial communities among the five species were clearly different but not the skin bacterial microbiota. The dominant operational taxonomic units beloged to the Moraxellaceae, Pseudomonadaceae, Rhodobacteraceae, Staphylococcaceae and Vibrionaceae families. Despite the differences in taxonomic composition, the presumptive metabolisms between the gills and skin of the five fishes investigated here was ≥ 94% and were dominated by basic metabolism, most likely reflecting the continuous exposure of these tissues in the surrounding seawater.