Machine-learning-based bitter taste threshold prediction model for bitter substances: fusing molecular docking binding energy with molecular descriptor features

Author:

Chen Can1,Deng Haichao2,Wei Huijie1,Wang Yaqing1,Xia Ning1,Teng Jianwen1,Zhang Qisong3,Huang Li1

Affiliation:

1. Guangxi University

2. Baihui Pharmaceutical Group co, LTD

3. Medical College, Guangxi University, Nanning

Abstract

Abstract

Establishing the bitterness threshold of molecules is vital for their application in healthy foods. Although numerous studies have utilized Mathematical algorithms to identify bitter chemicals, few models can accurately forecast the bitterness threshold. This study investigates the binding mode of bitter substances to the TAS2R14 receptor, establishing the relationship between the threshold and binding energy. Subsequently, a structure-taste relationship model was constructed using random forest (RF), extreme gradient boosting (XGBoost), categorical boosting (CatBoost), and gradient boosting decision tree (GBDT) algorithms. Results showed R-squared values of 0.906, 0.889, 0.936, and 0.877, respectively, suggesting a relatively good predictive capability for the bitterness threshold. Among these models, CatBoost performed optimally. The CatBoost model was then employed to predict the bitter thresholds of 223 compounds. The model provides a precise reference for detecting the bitterness thresholds of a wide range of chemicals and dangerous substances.

Publisher

Research Square Platform LLC

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