Hospital vulnerability to spread of respiratory infections: close contact data collection and mathematical modelling

Author:

Shirreff George1,Huynh Bich-Tram1,Duval Audrey1,Pereira Lara Cristina1,Annane Djillali2,Dinh Aurélien2,Lambotte Olivier3,Bulifon Sophie3,Guichardon Magali4,Beaune Sebastien5,Toubiana Julie6,Kermorvant-Duchemin Elsa6,Chéron Gerard6,Cordel Hugues7,Argaud Laurent8,Douplat Marion9,Abraham Paul8,Tazarourte Karim8,Martin-Gaujard Géraldine8,Vanhems Philippe10,Hilliquin Delphine10,Nguyen Duc11,Chelius Guillaume12,Fraboulet Antoine12,Temime Laura13,Opatowski Lulla1,Guillemot Didier1

Affiliation:

1. Institut Pasteur

2. AP-HP. Paris Saclay, Hôpital Raymond Poincaré

3. AP-HP. Paris Saclay, Hôpital de Bicêtre, Le Kremlin Bicêtre

4. AP-HP. Paris Saclay, Hôpital Paul Brousse

5. AP-HP. Paris Saclay, Hôpital Ambroise Paré

6. Université Paris Cité, Hôpital Necker-enfants malades

7. AP-HP. Hôpitaux Universitaires Paris Seine-Saint-Denis, Hôpital Avicenne

8. Hospices Civils de Lyon - Université Claude Bernard, Hôpital Edouard Herriot

9. Hospices Civils de Lyon - Université Claude Bernard, Hôpital Lyon Sud

10. Service Hygiène, Hospices Civils de Lyon - Université Claude Bernard

11. CHU de Bordeaux, Hôpital Pellegrin

12. INRIA

13. Conservatoire National des Arts et Métiers

Abstract

Abstract The transmission risk of SARS-CoV-2 within hospitals can exceed that in the general community because of more frequent close proximity interactions. However, epidemic risk across wards is still poorly described. We measured CPIs directly using wearable sensors given to all those present in a clinical ward over a 36-hour period, across 15 wards in three hospitals in spring 2020. Data were collected from 2114 participants. These data were combined with a simple transmission model describing the arrival of a single index case to the ward to estimate the risk of an outbreak. Estimated epidemic risk ranged four-fold, from 0.12 secondary infections per day in an adult emergency to 0.49 per day in general paediatrics. The risk presented by an index case in a patient varied twenty-fold across wards. Using simulation, we assessed the potential impact on outbreak risk of targeting the most connected individuals for prevention. We found that targeting those with the highest cumulative contact hours was most impactful (20% reduction for 5% of the population targeted), and on average resources were better spent targeting patients. This study reveals patterns of interactions between individuals in hospital during a pandemic and opens new routes for research into airborne nosocomial risk.

Publisher

Research Square Platform LLC

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