GAN‐LSTM‐3D: An efficient method for lung tumour 3D reconstruction enhanced by attention‐based LSTM

Author:

Hong Lu1,Modirrousta Mohammad Hossein2,Hossein Nasirpour Mohammad3,Mirshekari Chargari Mohammadreza4,Mohammadi Fardin5,Moravvej Seyed Vahid5ORCID,Rezvanishad Leila6,Rezvanishad Mohammadreza7,Bakhshayeshi Ivan8,Alizadehsani Roohallah9,Razzak Imran10,Alinejad‐Rokny Hamid8,Nahavandi Saeid11

Affiliation:

1. School of Computer Science and Engineering Hunan Institute of Technology Hengyang Hunan China

2. Faculty of Electrical Engineering K. N. Toosi University of Technology Tehran Iran

3. Department of Medical Genetics Institute of Medical Biotechnology National Institute of Genetic Engineering and Biotechnology (NIGEB) Tehran Iran

4. Department of Mathematics Science and Research Branch Islamic Azad University Tehran Iran

5. Internship in BioMedical Machine Learning Laboratory Sydney New South Wales Australia

6. Department of Electrical and Computer Engineering University of Kashan Kashan Iran

7. Strong Engineering Professional Graduated from Fani Rajaee Kashan Kashan Iran

8. BioMedical Machine Learning Lab (BML) The Graduate School of Biomedical Engineering UNSW Sydney Sydney New South Wales Australia

9. Institute for Intelligent Systems Research and Innovation (IISRI) Deakin University Waurn Ponds Victoria Australia

10. School of Computer Science and Engineering The University of New South Wales Sydney New South Wales Australia

11. Harvard Paulson School of Engineering and Applied Sciences Harvard University Allston Massachusetts USA

Abstract

AbstractThree‐dimensional (3D) image reconstruction of tumours can visualise their structures with precision and high resolution. In this article, GAN‐LSTM‐3D method is proposed for 3D reconstruction of lung cancer tumours from 2D CT images. Our method consists of three phases: lung segmentation, tumour segmentation, and tumour 3D reconstruction. Lung segmentation is done using snake optimisation followed by tumour segmentation using Gustafson‐Kessel (GK) clustering method. The outputs of GK (2D lung cancer images) are fed to a pre‐trained Visual Geometry Group (VGG) for feature extraction. The VGG outputs are used as input for an attention‐based LSTM which performs feature unpacking. The output of LSTM units is given to generator network of a Generative Adversarial Networks (GAN) model to carry out 3D reconstruction of (normal/cancerous) images with high quality. During training, the discriminator network of the GAN is used to judge the generator outputs. The authors to the best of their knowledge were the first to use GAN for 3D reconstruction of lung cancer tumours which is the primary contribution of this article. Moreover, existing studies are mostly focused on brain tumours and are not suitable for lung tumour reconstruction. Focusing on lung tumours is the second contribution of this article. Evaluation on LUNA data collection against existing methods like MC, MC + fairing etc. reveals the superiority of our method in terms of Hamming and Euclidean distance metrics. Additionally, the computational complexity of the proposed method is lower compared to evaluated methods.

Publisher

Institution of Engineering and Technology (IET)

Subject

Artificial Intelligence,Computer Networks and Communications,Computer Vision and Pattern Recognition,Human-Computer Interaction,Information Systems

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