What biologists want from their chloride reporters – a conversation between chemists and biologists

Author:

Zajac Matthew12,Chakraborty Kasturi123,Saha Sonali4,Mahadevan Vivek5,Infield Daniel T.6,Accardi Alessio789ORCID,Qiu Zhaozhu1011,Krishnan Yamuna12ORCID

Affiliation:

1. Department of Chemistry, The University of Chicago, Chicago, IL 60637, USA

2. Grossman Institute of Neuroscience, Quantitative Biology and Human Behavior, The University of Chicago, Chicago, IL 60637, USA

3. Ben May Department for Cancer Research, The University of Chicago, Chicago, IL 60637, USA

4. Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP), 13125 Berlin, Germany

5. Department of Cell & Systems Biology, University of Toronto, Toronto, ON M5S 3G5, Canada

6. Department of Molecular Physiology and Biophysics, The University of Iowa, Iowa City, IA 52242, USA

7. Department of Anesthesiology, Weill Cornell Medical School, New York, NY 10065, USA

8. Department of Physiology and Biophysics, Weill Cornell Medical School, New York, NY 10065, USA

9. Department of Biochemistry, Weill Cornell Medical School, New York, NY 10065, USA

10. Department of Physiology, Johns Hopkins University School of Medicine, Baltimore, MD 21218, USA

11. Solomon H. Snyder Department of Neuroscience, Johns Hopkins University School of Medicine, Baltimore, MD 21218, USA

Abstract

ABSTRACT Impaired chloride transport affects diverse processes ranging from neuron excitability to water secretion, which underlie epilepsy and cystic fibrosis, respectively. The ability to image chloride fluxes with fluorescent probes has been essential for the investigation of the roles of chloride channels and transporters in health and disease. Therefore, developing effective fluorescent chloride reporters is critical to characterizing chloride transporters and discovering new ones. However, each chloride channel or transporter has a unique functional context that demands a suite of chloride probes with appropriate sensing characteristics. This Review seeks to juxtapose the biology of chloride transport with the chemistries underlying chloride sensors by exploring the various biological roles of chloride and highlighting the insights delivered by studies using chloride reporters. We then delineate the evolution of small-molecule sensors and genetically encoded chloride reporters. Finally, we analyze discussions with chloride biologists to identify the advantages and limitations of sensors in each biological context, as well as to recognize the key design challenges that must be overcome for developing the next generation of chloride sensors.

Funder

The Wellcome Trust DBT India Alliance

Publisher

The Company of Biologists

Subject

Cell Biology

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