A critical comparison of topology-based pathway analysis methods

Author:

Ihnatova IvanaORCID,Popovici Vlad,Budinska Eva

Funder

Ministerstvo Školství, Mládeže a Tělovýchovy

FP7 International Cooperation

Ministerstvo Zdravotnictví Ceské Republiky

Publisher

Public Library of Science (PLoS)

Subject

Multidisciplinary

Reference30 articles.

1. Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles;A Subramanian;Proceedings of the National Academy of Sciences of the United States of America,2005

2. Ten Years of Pathway Analysis: Current Approaches and Outstanding Challenges;P Khatri;PLoS Comput Biol,2012

3. Harnessing the complexity of gene expression data from cancer: from single gene to structural pathway methods;F Emmert-Streib;Biology Direct,2012

4. Pathway Analysis: State of the Art;MA García-Campos;Frontiers in Physiology,2015

5. Comparative study on gene set and pathway topology-based enrichment methods;M Bayerlová;BMC Bioinformatics,2015

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