Comparative study on gene set and pathway topology-based enrichment methods-Reference-Cited by-同舟云学术

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Comparative study on gene set and pathway topology-based enrichment methods

Published:2015-10-22 Issue:1 Volume:16 Page:
ISSN:1471-2105
Container-title:BMC Bioinformatics
language:en
Short-container-title:BMC Bioinformatics

Author:

Bayerlová Michaela,Jung Klaus,Kramer Frank,Klemm Florian,Bleckmann Annalen,Beißbarth Tim

Funder

Deutsche Forschungsgemeinschaft (DE)

Bundesministerium für Bildung und Forschung (DE)

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Structural Biology

Link

http://link.springer.com/content/pdf/10.1186/s12859-015-0751-5.pdf

Reference62 articles.

1. Malone JH, Oliver B. Microarrays, deep sequencing and the true measure of the transcriptome. BMC Biol. 2011;9:34.

2. Beissbarth T. Interpreting experimental results using gene ontologies. Methods Enzymol 2005, 411:340–352.

3. Khatri P, Draghici S, Ostermeier GC, Krawetz SA. Profiling gene expression using onto-express. Genomics. 2002;79:266–70.

4. Mootha VK, Lindgren CM, Eriksson K-F, Subramanian A, Sihag S, Lehar J, et al. PGC-1α-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes. Nat Genet. 2003;34:267–73.

5. Beißbarth T, Speed TP. GOstat: find statistically overrepresented Gene Ontologies within a group of genes. Bioinformatics. 2004;20:1464–5.

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