Tensor based approach to the numerical treatment of the parameter estimation problems in mathematical immunology

Abstract

AbstractThe development of efficient computational tools for data assimilation and analysis using multi-parameter models is one of the major issues in systems immunology. The mathematical description of the immune processes across different scales calls for the development of multiscale models characterized by a high dimensionality of the state space and a large number of parameters. In this study we consider a standard parameter estimation problem for two models, formulated as ODEs systems: the model of HIV infection and BrdU-labeled cell division model. The data fitting is formulated as global optimization of variants of least squares objective function. A new computational method based on Tensor Train (TT) decomposition is applied to solve the formulated problem. The idea of proposed method is to extract the tensor structure of the optimized functional and use it for optimization. The method demonstrated a better performance in comparison with some other broadly used global optimization techniques.