Molecular dynamics re-refinement of two different small RNA loop structures using the original NMR data suggest a common structure
Author:
Publisher
Springer Science and Business Media LLC
Subject
Spectroscopy,Biochemistry
Link
http://www.springerlink.com/index/pdf/10.1007/s10858-012-9642-5
Reference84 articles.
1. Al-Hashimi HM, Walter NG (2008) RNA dynamics: it is about time. Curr Opin Struct Biol 18(3):321–329
2. Auffinger P, Cheatham TE III et al (2007) Spontaneous formation of KCl aggregates in biomolecular simulations: a force field issue? J Chem Ther Comp 3:1851–1859
3. Baird NJ, Ferre-D’Amare AR (2010) Idiosyncratically tuned switching behavior of riboswitch aptamer domains revealed by comparative small-angle X-ray scattering analysis. RNA 16(3):598–609
4. Banas P, Hollas D et al (2010) Performance of molecular mechanics force fields for RNA simulations. Stability of UUCG and GNRA hairpins. J Chem Theory Comp 6:3836–3849
5. Berendsen HJC, Postma JPM et al (1984) Molecular dynamics with coupling to an external bath. J Comp Phys 81:3684–3690
Cited by 23 articles. 订阅此论文施引文献 订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献
1. Structures and Dynamics of DNA Mini-Dumbbells Are Force Field Dependent;Journal of Chemical Theory and Computation;2023-03-28
2. QM/MM Well-Tempered Metadynamics Study of the Mechanism of XBP1 mRNA Cleavage by Inositol Requiring Enzyme 1α RNase;Journal of Chemical Information and Modeling;2022-08-12
3. Computer-aided design of RNA-targeted small molecules: A growing need in drug discovery;Chem;2021-11
4. Advanced approaches for elucidating structures of large RNAs using NMR spectroscopy and complementary methods;Methods;2020-11
5. Accuracy of MD solvent models in RNA structure refinement assessed via liquid-crystal NMR and spin relaxation data;Journal of Structural Biology;2019-09
1.学者识别学者识别
2.学术分析学术分析
3.人才评估人才评估
"同舟云学术"是以全球学者为主线，采集、加工和组织学术论文而形成的新型学术文献查询和分析系统，可以对全球学者进行文献检索和人才价值评估。用户可以通过关注某些学科领域的顶尖人物而持续追踪该领域的学科进展和研究前沿。经过近期的数据扩容，当前同舟云学术共收录了国内外主流学术期刊6万余种，收集的期刊论文及会议论文总量共计约1.5亿篇，并以每天添加12000余篇中外论文的速度递增。我们也可以为用户提供个性化、定制化的学者数据。欢迎来电咨询！咨询电话：010-8811{复制后删除}0370
www.globalauthorid.com
TOP
Copyright © 2019-2024 北京同舟云网络信息技术有限公司 京公网安备11010802033243号 京ICP备18003416号-3