Using the Gibbs Motif Sampler for Phylogenetic Footprinting
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Humana Press
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http://link.springer.com/content/pdf/10.1007/978-1-59745-514-5_25.pdf
Reference44 articles.
1. Thompson, W., Rouchka, E. C., and Lawrence, C. E. (2003) Gibbs Recursive Sampler: finding transcription factor binding sites. Nucleic Acids Res. 31, 3580–3585.
2. Yan, B., Methe, B. A., Lovley, D. R., and Krushkal, J. (2004) Computational prediction of conserved operons and phylogenetic footprinting of transcription regulatory elements in the metal-reducing bacterial family Geobacteraceae. J. Theor. Biol. 230, 133–144.
3. McCue, L., Thompson, W., Carmack, C., et al. (2001) Phylogenetic footprinting of transcription factor binding sites in proteobacterial genomes. Nucleic Acids Res. 29, 774–782.
4. McCue, L. A., Thompson, W., Carmack, C. S., and Lawrence, C. E. (2002) Factors influencing the identification of transcription factor binding sites by cross-species comparison. Genome Res. 12, 1523–1532.
5. Conlan, S., Lawrence, C., and McCue, L. A. (2005) Rhodopseudomonas palustris regulons detected by cross-species analysis of alphaproteobacterial genomes. Appl. Environ. Microbiol. 71, 7442–7452.
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