A genomic dataset of single‐nucleotide polymorphisms generated by ddRAD tag sequencing in Q. petraea (Matt.) Liebl. populations from Central-Eastern Europe and Balkan Peninsula-Reference-Cited by-同舟云学术

A genomic dataset of single‐nucleotide polymorphisms generated by ddRAD tag sequencing in Q. petraea (Matt.) Liebl. populations from Central-Eastern Europe and Balkan Peninsula

Published:2021-04-19 Issue:2 Volume:78 Page:
ISSN:1286-4560
Container-title:Annals of Forest Science
language:en
Short-container-title:Annals of Forest Science

Author:

Tóth Endre Gy.^ORCID,Köbölkuti Zoltán A.^ORCID,Cseke Klára^ORCID,Kámpel József D.^ORCID,Takács Roland,Tomov Vladimir T.,Ábrán Péter,Stojnic Srdjan^ORCID,Vastag Erna^ORCID,Mataruga Milan^ORCID,Daničić Vanja^ORCID,Tahirukaj Egzon,Zhelev Petar^ORCID,Orlovic Sasa^ORCID,Benke Attila^ORCID,Borovics Attila^ORCID

Abstract

Abstract Key message This genomic dataset provides highly variable SNP markers from georeferenced natural Quercus petraea (Matt.) Liebl. populations collected in Bulgaria, Hungary, Romania, Serbia, Bosnia and Herzegovina, Kosovo* and Albania. These SNP loci can be used to assess genetic diversity, differentiation, and population structure, and can also be used to detect signatures of selection and local adaptation. The dataset can be accessed at

https://doi.org/10.5281/zenodo.3908963/

(Tóth et al.2020). Associated metadata available at

https://metadata-afs.nancy.inra.fr/geonetwork/srv/fre/catalog.search#/metadata/b6fee4fa-01e9-44d0-92f5-ad19379f9693

Funder

Kaán Károly project

Ministry of Education, Science and Technological Development of the Republic of Serbia

National Science Fund of Bulgaria

Publisher

Springer Science and Business Media LLC

Subject

Ecology,Forestry

Link

https://link.springer.com/content/pdf/10.1007/s13595-021-01051-6.pdf

Reference51 articles.

1. Allendorf FW, Hohenlohe PA, Luikart G (2010) Genomics and the future of conservation genetics. Nat Rev Genet 11:697–709. https://doi.org/10.1038/nrg2844

2. Andrews S (2010) FastQC: a quality control tool for high throughput sequence data. Available online at: http://www.bioinformatics.babraham.ac.uk/projects/fastqc

3. Andrews KR, Good JM, Miller MR, Luikart G, Hohenlohe PA (2016) Harnessing the power of RADseq for ecological and evolutionary genomics. Nat Rev Gen 17:81. https://doi.org/10.1038/nrg.2015.28

4. Arnold B, Corbett-Detig RB, Hartl D, Bomblies K (2013) RAD seq underestimates diversity and introduces genealogical biases due to nonrandom haplotype sampling. MolEcol 22:3179–3190. https://doi.org/10.1111/mec.12276

5. Blanc-Jolivet C, Bakhtina S, Yanbaev R, Yanbaev Y, Mader M, Guichoux E, Degen B (2020) Development of new SNPs loci on Quercus robur and Quercus petraea for genetic studies covering the whole species’ distribution range. Conserv Genet Resour 1-4. https://doi.org/10.1007/s12686-020-01141-z

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5. Correction to: A genomic dataset of single‐nucleotide polymorphisms generated by ddRAD tag sequencing in Q. petraea (Matt.) Liebl. populations from Central‑Eastern Europe and Balkan Peninsula;Annals of Forest Science;2021-06-28